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Report for CCDS64057.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
64057.1 Public Homo sapiens 4 LARP1B 24 110 108 CCDS HistoryNCBI Gene:55132Re-query CCDS DB by CCDS ID:64057.1Re-query CCDS DB by GeneID:55132See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 64057.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000394288.7 ENSP00000377829.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000394288.7Link to Ensembl Protein Viewer:ENSP00000377829.3Re-query CCDS DB by Nucleotide ID:ENST00000394288Re-query CCDS DB by Protein ID:ENSP00000377829
Original member Current member EBI ENST00000648358.2 ENSP00000497514.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000648358.2Link to Ensembl Protein Viewer:ENSP00000497514.2Re-query CCDS DB by Nucleotide ID:ENST00000648358Re-query CCDS DB by Protein ID:ENSP00000497514
Original member Current member NCBI NM_001278604.2 NP_001265533.1 Accepted alive Link to Nucleotide Sequence:NM_001278604.2Link to Protein Sequence:NP_001265533.1Re-query CCDS DB by Nucleotide ID:NM_001278604Re-query CCDS DB by Protein ID:NP_001265533Link to BLAST:NP_001265533.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001265533.1 335 Q659C4-3 335 100% 0 0

Chromosomal Locations for CCDS 64057.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 128074952 128074993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 128077788 128077962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 128082165 128082305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 128091001 128091144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 128091347 128091512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 128098186 128098330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 128107139 128107313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 128107883 128107902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1008 nt):
ATGGAGAATTGGCCAACACCAAGTGAATTAGTGAACACTGGATTTCAGAGCGTCCTCAGCCAAGGAAATA
AAAAGCCACAAAATAGAAAAGAAAAAGAAGAGAAGGTTGAAAAGAGAAGTAACAGTGACAGCAAAGAAAA
CCGGGAAACAAAATTAAATGGTCCTGGTGAAAACGTCAGTGAGGATGAGGCTCAGTCAAGTAATCAACGT
AAGAGAGCTAATAAGCACAAGTGGGTACCACTCCACTTAGATGTTGTAAGATCAGAGAGTCAAGAAAGAC
CTGGATCCCGGAACAGCTCAAGATGTCAACCTGAAGCAAATAAACCAACACATAACAATAGGAGAAATGA
TACACGAAGTTGGAAGCGAGATAGAGAAAAAAGGGATGATCAAGATGACGTTTCCAGTGTGAGAAGTGAG
GGTGGTAATATCCGAGGTTCCTTTAGAGGTCGAGGAAGAGGCCGAGGACGGGGAAGAGGACGAGGCAGAG
GAAATCCTCGATTGAACTTTGATTATTCATATGGTTATCAAGAACATGGTGAAAGGACTGATCAACCATT
TCAAACAGAACTTAATACCAGTATGATGTATTACTATGATGATGGTACAGGTGTACAGGTGTATCCTGTG
GAAGAAGCATTGCTTAAAGAGTATATTAAGCGTCAAATTGAATATTACTTCAGTGTAGAAAATTTGGAAC
GAGACTTCTTTCTTCGGGGAAAGATGGATGAACAAGGTTTCTTGCCTATTTCCCTGATTGCTGGTTTTCA
GCGTGTTCAGGCTCTCACTACAAACCTTAATCTCATCTTAGAGGCACTGAAGGATAGCACAGAAGTAGAA
ATTGTGGATGAGAAAATGAGAAAAAAGATAGAACCAGAAAAATGGCCAATTCCAGGCCCTCCTCCACGCA
GTGTGCCACCAACAGACTTCTCTCAACTGATTGATTGTCCAGAGTTTGTACCAGGCCAAGCCTTTTGCTC
ACATACAGTCAGGGTGATGATCTTCTGA

Translation (335 aa):
MENWPTPSELVNTGFQSVLSQGNKKPQNRKEKEEKVEKRSNSDSKENRETKLNGPGENVSEDEAQSSNQR
KRANKHKWVPLHLDVVRSESQERPGSRNSSRCQPEANKPTHNNRRNDTRSWKRDREKRDDQDDVSSVRSE
GGNIRGSFRGRGRGRGRGRGRGRGNPRLNFDYSYGYQEHGERTDQPFQTELNTSMMYYYDDGTGVQVYPV
EEALLKEYIKRQIEYYFSVENLERDFFLRGKMDEQGFLPISLIAGFQRVQALTTNLNLILEALKDSTEVE
IVDEKMRKKIEPEKWPIPGPPPRSVPPTDFSQLIDCPEFVPGQAFCSHTVRVMIF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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