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Report for CCDS6077.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6077.1 Public Homo sapiens 8 RBPMS 24 110 108 CCDS HistoryNCBI Gene:11030Re-query CCDS DB by CCDS ID:6077.1Re-query CCDS DB by GeneID:11030See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)


Attributes
Nonsense-mediated decay (NMD) candidate

Sequence IDs included in CCDS 6077.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000320203.8 ENSP00000318102.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000320203.8Link to Ensembl Protein Viewer:ENSP00000318102.4Re-query CCDS DB by Nucleotide ID:ENST00000320203Re-query CCDS DB by Protein ID:ENSP00000318102
Original member Current member EBI ENST00000397323.9 ENSP00000380486.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000397323.9Link to Ensembl Protein Viewer:ENSP00000380486.4Re-query CCDS DB by Nucleotide ID:ENST00000397323Re-query CCDS DB by Protein ID:ENSP00000380486
Original member Current member NCBI NM_001008710.3 NP_001008710.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001008710.3Link to Protein Sequence:NP_001008710.1Re-query CCDS DB by Nucleotide ID:NM_001008710Re-query CCDS DB by Protein ID:NP_001008710Link to BLAST:NP_001008710.1
Original member Current member NCBI NM_006867.4 NP_006858.1 Accepted alive Link to Nucleotide Sequence:NM_006867.4Link to Protein Sequence:NP_006858.1Re-query CCDS DB by Nucleotide ID:NM_006867Re-query CCDS DB by Protein ID:NP_006858Link to BLAST:NP_006858.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001008710.1 196 Q93062-1 196 100% 0 0
NP_006858.1 196 Q93062-1 196 100% 0 0

Chromosomal Locations for CCDS 6077.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 30385093 30385158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 30474779 30474856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 30477799 30477837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 30479315 30479377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 30504286 30504436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 30544494 30544624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 30558887 30558949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (591 nt):
ATGAACAACGGCGGCAAAGCCGAGAAGGAGAACACCCCGAGCGAGGCCAACCTTCAGGAGGAGGAGGTCC
GGACCCTATTTGTCAGTGGCCTTCCTCTGGATATCAAACCTCGGGAGCTCTATCTGCTTTTCAGACCATT
TAAGGGCTATGAGGGTTCTCTTATAAAGCTCACATCTAAACAGCCTGTAGGTTTTGTCAGTTTTGACAGT
CGCTCAGAAGCAGAGGCTGCAAAGAATGCTTTGAATGGCATCCGCTTCGATCCTGAAATTCCGCAAACAC
TACGACTAGAGTTTGCTAAGGCAAACACGAAGATGGCCAAGAACAAACTCGTAGGGACTCCAAACCCCAG
TACTCCTCTGCCCAACACTGTACCTCAGTTCATTGCCAGAGAGCCATATGAGCTCACAGTGCCTGCACTT
TACCCCAGTAGCCCTGAAGTGTGGGCCCCGTACCCTCTGTACCCAGCGGAGTTAGCGCCTGCTCTACCTC
CTCCTGCTTTCACCTATCCCGCTTCACTGCATGCCCAGATGCGCTGGCTCCCTCCCTCCGAGGCTACTTC
TCAGGGCTGGAAGTCCCGTCAGTTCTGCTGA

Translation (196 aa):
MNNGGKAEKENTPSEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQPVGFVSFDS
RSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGTPNPSTPLPNTVPQFIAREPYELTVPAL
YPSSPEVWAPYPLYPAELAPALPPPAFTYPASLHAQMRWLPPSEATSQGWKSRQFC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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