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Report for CCDS60574.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
60574.1 Public Homo sapiens 10 NUTM2B 24 110 108 CCDS HistoryNCBI Gene:729262Re-query CCDS DB by CCDS ID:60574.1Re-query CCDS DB by GeneID:729262See the combined annotation on chromosome 10 in Sequence Viewer

Public Note for CCDS 60574.1
The exon combination of this CCDS representation is inferred due to a lack of full-length transcript support for this gene. It is supported by the partial gene-specific EST, HY013942.1, and by full-length transcript alignments from the paralogous NUTM2A gene.

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 60574.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000429828.7 ENSP00000394623.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000429828.7Link to Ensembl Protein Viewer:ENSP00000394623.1Re-query CCDS DB by Nucleotide ID:ENST00000429828Re-query CCDS DB by Protein ID:ENSP00000394623
Original member Current member NCBI NM_001278495.2 NP_001265424.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001278495.2Link to Protein Sequence:NP_001265424.1Re-query CCDS DB by Nucleotide ID:NM_001278495Re-query CCDS DB by Protein ID:NP_001265424Link to BLAST:NP_001265424.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001265424.1 878 A6NNL0-1 878 100% 0 0

Chromosomal Locations for CCDS 60574.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 79703610 79703991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79706042 79706741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79708699 79708827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79709800 79709939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79710382 79710764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79711250 79711366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79711700 79712485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2637 nt):
ATGGAAGTAAAGGGGCCATCAGGTAGAAGCTTTTGCTGTGAGTCAGAAGGACAATTTAAAAGTTGCCTAA
AGAGGCACACGCCATCTCTGCTGCTGCCTTCCAGTTGGAAGGGAAACTCAGGTTCTTGCCTAATGGCCGA
AGCCCTTCACAGAACGTCCCCCACCCCTAACAGCTGCCCACTGCCCCTCCCCCTCTGCAGAATGTCTGGG
GTCCTATGTTCCAGGAACCTGTTTACTTTCAAATTTTCCCTGTTTCAGTTGGACTCAGGAGCATCTGGTG
AGCCAGGTCACTCTCTGGGTCTTACCCTTGGCTTTTCTTATTGCGGAAACTGCCAGACGGCGGTGGTCAG
TGCCCAGCCTGAGGGGATGGCTTCGAATGGAGCATACCCAGTGCTGGGACCGGGCGTGACCGCGAACCCT
GGCACCTCCCTGTCTGTGTTCACGGCTCTGCCCTTCACCACACCCGCTCCCGGCCCAGCACACGGGCCGC
TCCTTGTGACTGCAGGGGCTCCTCCAGGCGGCCCTCTGGTGCTGTCTACCTTCCCCAGCACACCTCTGGT
GACAGAACAGGATGGCTGCGGCCCGAGTGGGGCCGGGGCTTCCAACGTCTTTGTCCAGATGAGGACAGAG
GTGGGGCCTGTGAAGGCCGCTCAGGCGCAGACCTTGGTCCTAACTCAGGCCCCCCTCGTCTGGCAGGCTC
CAGGCGCCCTCTGCGGAGGTGTTGTGTGTCCACCTCCCCTACTCCTGGCAGCTGCTCCTGTGGTGCCTGT
TATGGCTGCCCAGGTGGTTGGGGGCACCCAGGCCTGTGAGGGAGGCTGGTCCCAGGGCCTTCCTCTTCCA
CCACCACCACCACCGGCTGCCCAGCTGCCCCCCATTGTGTCCCAAGGGAATGCTGGGCCATGGCCACAAG
GGGCTCATGGAGAGAGCAGCCTGGCTTCCTCCCAGGCCAAGGCCCCGCCAGATGACTCCTGTAACCCCAG
GAGTGTCTATGAGAACTTCCGACTCTGGCAGCACTACAAGCCCCTGGCCCGGAGGCACCTTCCCCAGAGT
CCTGACACCGAAGCGCTTTCGTGCTTCCTCATCCCAGTTCTCCGATCGCTGGCCCGGCGGAAGCCCACCA
TGACCCTGGAGGAGGGACTGTGGCGGGCCATGCGGGAATGGCAGCACACGAGCAACTTTGACCGGATGAT
CTTCTACGAGATGGCGGAAAAGTTCCTGGAGTTTGAGGCTGAGGAGGAGATGCAGATTCAGAAATCGCAA
TGGATGAAGGGGCCCCAGTGCCTGCCTCCTCCAGCCACACCGAGGCTTGAACCTCGAGGACCCCCGGCCC
CTGAGGTGGTCAAGCAGCCAGTGTACCTTCCCAGCAAGGCCGGCCCCAAGGCCCCGACTGCCTGCCTGCC
ACCACCCAGGCCCCAGAGGCCAGTGACCAAGGCCCGCCGGCCACCACCCCGGCCCCACCGGCGAGCAGAG
ACCAAGGCCCGCCTGCCACCACCCAGGCCCCAGAGACCAGCAGAGACCAAGGTCCCTGAGGAGATCCCCC
CAGAAGTGGTGCAGGAGTATGTGGACATCATGGAGGAGCTGCTGGGGCCTTCCCTCGGGGCCACGGGGGA
GCCCGAGAAACAACGGGAAGAGGGCAAAGTGAAGCAGCCACAGGAAGAGGACTGGACGCCCCCAGACCCG
GGCCTCCTGAGCTACATTGACAAGCTGTGTTCCCAGAAAGACTTCGTCACCAAGGTGGAGGCCGTCATTC
ATCCCCAATTCCTGGAAGAATTGCTTTCCCCAGATCCACAGATGGATTTCTTGGCCCTAAGCCAGGACCT
GGAGCAGGAGGAAGGACTCACCCTTGCCCAGCTAGTGGAGAAGCGCCTCCCACCCTTGAAGGAGAAACAG
CATGCGAGGGCAGCCCCTAGTCGTGGCACAGCCCGGTTGGACTCAAGTTCTTCTAAGTTTGCAGCTGGCC
AAGGAGCAGAGAGAGACGTCCCTGACCCCCAACAAGGGGTTGGCATGGAAACCTGCCCACCCCAGATGAC
TGCCCGGGACTCTCAGGGACGAGGCAGAGCACACACTGGCATGGCCAGGTCCGAAGACTCTGTTGTGCTT
TTGGGATGTCAGGATTCCCCTGGGCTGAGGGCTGCCTGGCCAACCTCTCCTCCCCAGGACCACAGACCCA
CCTGCCCTGGCGTGGGTACCAAGGATGCCTTGGATCTCCCTGGAGGGTCTCCTGTCAGGGAGTCACATGG
GCTGGCTCAGGGGTCAAGTGAGGAGGAGGAACTCCCCAGCCTGGCCTTCCTCTTGGGTTCCCAGCACAAG
CTTCTGCCCTGGTGGCTACCCCAGAGCCCTGTCCCTGCCTCGGGCCTTCTCAGCCCAGAAAAGTGGGGAC
CCCAGGGAACTCATCAGTCCCCATCTGCTGAGAGAAGAGGCCTCAACCTAGCACCTTCTCCTGCCAACAA
GGCCAAGAAGCGACCTCTCTTTGGAAGCCTGTCCCCTGCTGAAAAGACACCCTACCCAGGGCCTGGGCTC
AGGGTCTCTGGGGAGCAATCCCTGACTTGGGGGCTGGGTGGCCCCTCACAGTCTCAAAAGAGAAAGGGTG
ACCCCTTGGTCTCCAGGAAGGAGAAGAAGCAGCATTGTAGCCAGTAG

Translation (878 aa):
MEVKGPSGRSFCCESEGQFKSCLKRHTPSLLLPSSWKGNSGSCLMAEALHRTSPTPNSCPLPLPLCRMSG
VLCSRNLFTFKFSLFQLDSGASGEPGHSLGLTLGFSYCGNCQTAVVSAQPEGMASNGAYPVLGPGVTANP
GTSLSVFTALPFTTPAPGPAHGPLLVTAGAPPGGPLVLSTFPSTPLVTEQDGCGPSGAGASNVFVQMRTE
VGPVKAAQAQTLVLTQAPLVWQAPGALCGGVVCPPPLLLAAAPVVPVMAAQVVGGTQACEGGWSQGLPLP
PPPPPAAQLPPIVSQGNAGPWPQGAHGESSLASSQAKAPPDDSCNPRSVYENFRLWQHYKPLARRHLPQS
PDTEALSCFLIPVLRSLARRKPTMTLEEGLWRAMREWQHTSNFDRMIFYEMAEKFLEFEAEEEMQIQKSQ
WMKGPQCLPPPATPRLEPRGPPAPEVVKQPVYLPSKAGPKAPTACLPPPRPQRPVTKARRPPPRPHRRAE
TKARLPPPRPQRPAETKVPEEIPPEVVQEYVDIMEELLGPSLGATGEPEKQREEGKVKQPQEEDWTPPDP
GLLSYIDKLCSQKDFVTKVEAVIHPQFLEELLSPDPQMDFLALSQDLEQEEGLTLAQLVEKRLPPLKEKQ
HARAAPSRGTARLDSSSSKFAAGQGAERDVPDPQQGVGMETCPPQMTARDSQGRGRAHTGMARSEDSVVL
LGCQDSPGLRAAWPTSPPQDHRPTCPGVGTKDALDLPGGSPVRESHGLAQGSSEEEELPSLAFLLGSQHK
LLPWWLPQSPVPASGLLSPEKWGPQGTHQSPSAERRGLNLAPSPANKAKKRPLFGSLSPAEKTPYPGPGL
RVSGEQSLTWGLGGPSQSQKRKGDPLVSRKEKKQHCSQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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