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Report for CCDS59442.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
59442.1 Public Homo sapiens 20 PCED1A 24 110 108 CCDS HistoryNCBI Gene:64773Re-query CCDS DB by CCDS ID:59442.1Re-query CCDS DB by GeneID:64773See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 12, NCBI annotation release 104, Ensembl annotation release 71

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 59442.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000356872.7 ENSP00000349334.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000356872.7Link to Ensembl Protein Viewer:ENSP00000349334.3Re-query CCDS DB by Nucleotide ID:ENST00000356872Re-query CCDS DB by Protein ID:ENSP00000349334
Original member Current member NCBI NM_001271168.2 NP_001258097.1 Accepted alive Link to Nucleotide Sequence:NM_001271168.2Link to Protein Sequence:NP_001258097.1Re-query CCDS DB by Nucleotide ID:NM_001271168Re-query CCDS DB by Protein ID:NP_001258097Link to BLAST:NP_001258097.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001258097.1 403 Q9H1Q7-2 403 100% 0 0

Chromosomal Locations for CCDS 59442.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 2835462 2835709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 2836039 2836314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 2838232 2838478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 2838596 2838746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 2838844 2838929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 2839192 2839271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 2839789 2839912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1212 nt):
ATGGTCTTCTGTCTGTCGAGCGAGGAGCCGCGCCGCCCGCTGCGAAGCGACATGGTCCACTTCCAGGCCT
CGGAAGTCCAGCAGCTGCTACACAACAAGTTCGTGGTCATCTTGGGGGACTCCATTCAGAGGGCTGTGTA
CAAGGACCTGGTGCTCTTGCTCCAGAAAGACTCACTGCTCACAGCTGCCCAGCTGAAAGCCAAGTACCTT
GAGGATGTTCTGGAAGAGCTGACATATGGACCTGCCCCGGACCTGGTGATCATCAACTCCTGCCTCTGGG
ATCTCTCCAGATATGGTCGCTGCTCAATGGAGAGCTACCGGGAGAACCTGGAGCGGGTGTTTGTGCGCAT
GGACCAAGTATTGCCAGACTCCTGCCTGCTGGTGTGGAACATGGCGATGCCCCTCGGGGAACGTATCACT
GGGGGTTTCCTCCTGCCAGAGCTCCAGCCCCTGGCAGGCTCCCTGCGGCGGGATGTGGTTGAAGGGAACT
TCTACAGTGCTACGCTGGCCGGGGACCACTGCTTTGATGTCCTAGACCTCCACTTTCACTTCCGGCATGC
AGTACAGCACCGTCATCGGGATGGTGTCCACTGGGACCAGCATGCACACCGCCACCTCTCACACCTGCTT
CTGACCCATGTGGCTGACGCCTGGGGCGTGGAGCTGCCCAAGCGTGGCTATCCCCCTGACCCGTGGATTG
AGGACTGGGCAGAGATGAATCATCCATTCCAGGGAAGCCATAGGCAGACCCCAGACTTCGGGGAGCACCT
GGCCTTGCTCCCACCCCCACCTTCTTCTTTGCCTCCTCCCATGCCTTTTCCCTACCCGCTTCCTCAGCCC
TCGCCACCTCCCCTCTTCCCACCCCTGCCCCAGGATACCCCTTTTTTCCCAGGCCAGCCCTTCCCACCCC
ATGAATTCTTCAACTATAATCCAGTGGAGGACTTCTCGATGCCACCCCACTTAGGATGTGGCCCTGGAGT
GAACTTTGTGCCTGGCCCTCTGCCACCTCCAATCCCTGGCCCTAATCCCCATGGTCAGCACTGGGGCCCA
GTGGTCCACCGGGGGATGCCACGCTATGTTCCTAACAGCCCCTACCATGTGCGGAGAATGGGGGGGCCCT
GCAGGCAGCGGCTCAGACACTCAGAGAGACTGATCCACACATACAAACTGGACAGACGGCCTCCTGCCCA
TTCGGGGACATGGCCTGGGTAG

Translation (403 aa):
MVFCLSSEEPRRPLRSDMVHFQASEVQQLLHNKFVVILGDSIQRAVYKDLVLLLQKDSLLTAAQLKAKYL
EDVLEELTYGPAPDLVIINSCLWDLSRYGRCSMESYRENLERVFVRMDQVLPDSCLLVWNMAMPLGERIT
GGFLLPELQPLAGSLRRDVVEGNFYSATLAGDHCFDVLDLHFHFRHAVQHRHRDGVHWDQHAHRHLSHLL
LTHVADAWGVELPKRGYPPDPWIEDWAEMNHPFQGSHRQTPDFGEHLALLPPPPSSLPPPMPFPYPLPQP
SPPPLFPPLPQDTPFFPGQPFPPHEFFNYNPVEDFSMPPHLGCGPGVNFVPGPLPPPIPGPNPHGQHWGP
VVHRGMPRYVPNSPYHVRRMGGPCRQRLRHSERLIHTYKLDRRPPAHSGTWPG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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