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Report for CCDS58414.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58414.1 Public Homo sapiens 16 PKMYT1 24 110 108 CCDS HistoryNCBI Gene:9088Re-query CCDS DB by CCDS ID:58414.1Re-query CCDS DB by GeneID:9088See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 58414.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000574385.5 ENSP00000458943.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000574385.5Link to Ensembl Protein Viewer:ENSP00000458943.1Re-query CCDS DB by Nucleotide ID:ENST00000574385Re-query CCDS DB by Protein ID:ENSP00000458943
Original member Current member EBI ENST00000573944.5 ENSP00000459123.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000573944.5Link to Ensembl Protein Viewer:ENSP00000459123.1Re-query CCDS DB by Nucleotide ID:ENST00000573944Re-query CCDS DB by Protein ID:ENSP00000459123
Original member Current member NCBI NM_001258451.2 NP_001245380.1 Accepted alive Link to Nucleotide Sequence:NM_001258451.2Link to Protein Sequence:NP_001245380.1Re-query CCDS DB by Nucleotide ID:NM_001258451Re-query CCDS DB by Protein ID:NP_001245380Link to BLAST:NP_001245380.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001245380.1 490 Q99640-3 490 100% 0 0

Chromosomal Locations for CCDS 58414.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 2972953 2973064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 2973138 2973215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 2974000 2974157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 2974245 2974417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 2974550 2974656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 2975319 2975812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 2976664 2977014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1473 nt):
ATGCCCATGCCCACGGAGGGCACCCCGCCACCTCTGAGTGGCACCCCCATCCCAGTCCCAGCCTACTTCC
GCCACGCAGAACCTGGATTCTCCCTCAAGAGGCCCAGGGGGCTCAGCCGGAGCCTCCCACCTCCGCCCCC
TGCCAAGGGCAGCATTCCCATCAGCCGCCTCTTCCCTCCTCGGACCCCAGGCTGGCACCAGCTGCAGCCC
CGGCGGGTGTCATTCCGGGGCGAGGCCTCAGAGACTCTGCAGAGCCCTGGGTATGACCCAAGCCGGCCAG
AGTCCTTCTTCCAGCAGAGCTTCCAGAGGCTCAGCCGCCTGGGCCATGGCTCCTACGGAGAGGTCTTCAA
GGTGCGCTCCAAGGAGGACGGCCGGCTCTATGCGGTAAAGCGTTCCATGTCACCATTCCGGGGCCCCAAG
GACCGGGCCCGCAAGTTGGCCGAGGTGGGCAGCCACGAGAAGGTGGGGCAGCACCCATGCTGCGTGCGGC
TGGAGCAGGCCTGGGAGGAGGGCGGCATCCTGTACCTGCAGACGGAGCTGTGCGGGCCCAGCCTGCAGCA
ACACTGTGAGGCCTGGGGTGCCAGCCTGCCTGAGGCCCAGGTCTGGGGCTACCTGCGGGACACGCTGCTT
GCCCTGGCCCATCTGCACAGCCAGGGCCTGGTGCACCTTGATGTCAAGCCTGCCAACATCTTCCTGGGGC
CCCGGGGCCGCTGCAAGCTGGGTGACTTCGGACTGCTGGTGGAGCTGGGTACAGCAGGAGCTGGTGAGGT
CCAGGAGGGAGACCCCCGCTACATGGCCCCCGAGCTGCTGCAGGGCTCCTATGGGACAGCAGCGGATGTG
TTCAGTCTGGGCCTCACCATCCTGGAAGTGGCATGCAACATGGAGCTGCCCCACGGTGGGGAGGGCTGGC
AGCAGCTGCGCCAGGGCTACCTGCCCCCTGAGTTCACTGCCGGTCTGTCTTCCGAGCTGCGTTCTGTCCT
TGTCATGATGCTGGAGCCAGACCCCAAGCTGCGGGCCACGGCCGAGGCCCTGCTGGCACTGCCTGTGTTG
AGGCAGCCGCGGGCCTGGGGTGTGCTGTGGTGCATGGCAGCGGAGGCCCTGAGCCGAGGGTGGGCCCTGT
GGCAGGCCCTGCTTGCCCTGCTCTGCTGGCTCTGGCATGGGCTGGCTCACCCTGCCAGCTGGCTACAGCC
CCTGGGCCCGCCAGCCACCCCGCCTGGCTCACCACCCTGCAGTTTGCTCCTGGACAGCAGCCTCTCCAGC
AACTGGGATGACGACAGCCTAGGGCCTTCACTCTCCCCTGAGGCTGTCCTGGCCCGGACTGTGGGGAGCA
CCTCCACCCCCCGGAGCAGGTGCACACCCAGGGATGCCCTGGACCTAAGTGACATCAACTCAGAGCCTCC
TCGGGGCTCCTTCCCCTCCTTTGAGCCTCGGAACCTCCTCAGCCTGTTTGAGGACACCCTAGACCCAACC
TGA

Translation (490 aa):
MPMPTEGTPPPLSGTPIPVPAYFRHAEPGFSLKRPRGLSRSLPPPPPAKGSIPISRLFPPRTPGWHQLQP
RRVSFRGEASETLQSPGYDPSRPESFFQQSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPK
DRARKLAEVGSHEKVGQHPCCVRLEQAWEEGGILYLQTELCGPSLQQHCEAWGASLPEAQVWGYLRDTLL
ALAHLHSQGLVHLDVKPANIFLGPRGRCKLGDFGLLVELGTAGAGEVQEGDPRYMAPELLQGSYGTAADV
FSLGLTILEVACNMELPHGGEGWQQLRQGYLPPEFTAGLSSELRSVLVMMLEPDPKLRATAEALLALPVL
RQPRAWGVLWCMAAEALSRGWALWQALLALLCWLWHGLAHPASWLQPLGPPATPPGSPPCSLLLDSSLSS
NWDDDSLGPSLSPEAVLARTVGSTSTPRSRCTPRDALDLSDINSEPPRGSFPSFEPRNLLSLFEDTLDPT


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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