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Report for CCDS56410.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56410.1 Public Homo sapiens 6 RPP21 24 110 108 CCDS HistoryNCBI Gene:79897Re-query CCDS DB by CCDS ID:56410.1Re-query CCDS DB by GeneID:79897See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56410.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000436442.2 ENSP00000397778.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000436442.2Link to Ensembl Protein Viewer:ENSP00000397778.2Re-query CCDS DB by Nucleotide ID:ENST00000436442Re-query CCDS DB by Protein ID:ENSP00000397778
Original member Current member NCBI NM_001199121.3 NP_001186050.1 Accepted alive Link to Nucleotide Sequence:NM_001199121.3Link to Protein Sequence:NP_001186050.1Re-query CCDS DB by Nucleotide ID:NM_001199121Re-query CCDS DB by Protein ID:NP_001186050Link to BLAST:NP_001186050.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001186050.1 144 Q9H633-3 144 100% 0 0

Chromosomal Locations for CCDS 56410.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 30345172 30345228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30345298 30345398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30345491 30345573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30346432 30346564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30346713 30346773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (435 nt):
ATGGCGGGGCCGGTGAAGGACCGCGAGGCCTTCCAGAGGCTCAACTTCCTGTACCAGGCCGCCCATTGTG
TCCTTGCCCAGGACCCCGAGAACCAGGCGCTGGCGAGGTTTTACTGCTACACTGAGAGGACCATTGCGAA
GCGGCTCGTCTTGCGGCGGGATCCCTCGGTGAAGAGGACTCTCTGTCGAGGCTGCTCTTCCCTCCTCGTC
CCGGGCCTCACCTGCACCCAGCGCCAGAGACGCTGCAGGGGACAGCGCTGGACCGTACAGACCTGCCTAA
CATGCCAGCGCAGCCAACGCTTCCTCAATGATCCCGGGCATTTACTCTGGGGAGACAGGCCTGAGGCCCA
GCTCGGGAGCCAAGCAGGTGAGAGATTCCAAACCACTACAACCCTTGCCAAACACAGCCCACTCCATTTC
AGACCGCCTTCCTGA

Translation (144 aa):
MAGPVKDREAFQRLNFLYQAAHCVLAQDPENQALARFYCYTERTIAKRLVLRRDPSVKRTLCRGCSSLLV
PGLTCTQRQRRCRGQRWTVQTCLTCQRSQRFLNDPGHLLWGDRPEAQLGSQAGERFQTTTTLAKHSPLHF
RPPS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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