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Report for CCDS55812.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55812.1 Public Homo sapiens 12 PPFIBP1 24 110 108 CCDS HistoryNCBI Gene:8496Re-query CCDS DB by CCDS ID:55812.1Re-query CCDS DB by GeneID:8496See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55812.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000318304.12 ENSP00000314724.8 Accepted alive Link to Ensembl Transcript Viewer:ENST00000318304.12Link to Ensembl Protein Viewer:ENSP00000314724.8Re-query CCDS DB by Nucleotide ID:ENST00000318304Re-query CCDS DB by Protein ID:ENSP00000314724
Original member Current member NCBI NM_177444.3 NP_803193.3 Accepted alive Link to Nucleotide Sequence:NM_177444.3Link to Protein Sequence:NP_803193.3Re-query CCDS DB by Nucleotide ID:NM_177444Re-query CCDS DB by Protein ID:NP_803193Link to BLAST:NP_803193.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_803193.3 1011 Q86W92-1 1011 100% 0 0

Chromosomal Locations for CCDS 55812.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 27633397 27633460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 27634910 27635115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 27646062 27646148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 27647729 27647842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 27650010 27650141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 27654722 27654814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 27655143 27655235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 27656616 27656730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 27660884 27660945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 27664362 27664437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 27667166 27667320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 27671431 27671546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 27672427 27672483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 27673767 27673827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 27674192 27674221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 27676428 27676599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 27679489 27679639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 27679933 27680061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 27681546 27681696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 27682387 27682498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 27682615 27682703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 27687385 27687507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 27688298 27688423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 27689015 27689203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 27691749 27691928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 27692591 27692656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 27692796 27692882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3036 nt):
ATGATGAGTGATGCAAGTGACATGTTGGCTGCAGCGTTGGAGCAGATGGATGGTATCATAGCAGGTTCTA
AGGCTCTGGAATATTCCAATGGGATTTTTGATTGCCAATCTCCCACCTCTCCATTCATGGGAAGTTTGCG
AGCTCTGCACCTTGTGGAAGACCTGCGTGGATTGTTAGAGATGATGGAAACAGATGAGAAAGAAGGCTTG
AGATGCCAGATCCCAGATTCAACAGCAGAAACGCTTGTTGAATGGCTTCAGAGTCAAATGACAAATGGAC
ACCTACCAGGGAACGGAGATGTGTATCAAGAAAGGCTGGCACGTTTAGAAAATGATAAAGAATCCCTCGT
TCTTCAGGTAAGTGTGTTAACAGACCAGGTGGAGGCTCAGGGAGAGAAGATTCGAGATTTGGAGTTTTGT
CTTGAAGAGCACAGAGAGAAGGTGAATGCCACAGAAGAAATGCTGCAGCAGGAGCTTCTAAGTAGGACAT
CCTTAGAAACTCAGAAGTTGGATCTGATGGCTGAAATATCTAACTTGAAGTTGAAACTGACAGCTGTAGA
GAAGGACAGATTGGATTATGAAGATAAGTTCAGAGACACAGAGGGGCTGATTCAGGAGATCAATGATTTG
AGGTTAAAAGTTAGTGAAATGGACAGTGAGAGACTTCAGTATGAAAAAAAGCTTAAATCAACCAAATCTT
TAATGGCCAAACTTTCTAGCATGAAAATCAAGGTGGGTCAGATGCAGTATGAAAAGCAGCGGATGGAACA
AAAATGGGAGTCACTGAAGGATGAACTGGCATCTTTAAAAGAACAACTAGAAGAAAAGGAATCTGAAGTA
AAAAGGCTACAAGAAAAATTGGTTTGCAAGATGAAAGGAGAAGGGGTTGAAATTGTTGATAGAGACATCG
AAGTACAAAAAATGAAAAAAGCTGTGGAGTCCTTGATGGCAGCAAATGAAGAAAAGGATCGGAAAATAGA
AGATCTTCGACAGTGCCTGAACAGGTACAAGAAAATGCAAGACACGGTGGTACTGGCCCAAGGCAAAGAT
GGAGAATATGAAGAGCTGCTCAATTCCAGTTCCATCTCCTCTTTGCTGGATGCACAGGGTTTCAGTGATC
TGGAGAAAAGTCCATCACCCACTCCAGTAATGGGATCTCCCAGTTGTGACCCATTTAACACAAGTGTTCC
CGAAGAGTTCCATACTACCATCTTGCAAGTTTCCATCCCTTCATTATTGCCAGCAACTGTAAGCATGGAA
ACTTCTGAAAAATCAAAGTTGACTCCTAAGCCAGAGACTTCATTTGAAGAAAATGATGGAAACATAATCC
TTGGTGCCACTGTTGATACCCAACTGTGTGATAAACTTTTAACTTCAAGTCTGCAGAAGTCCAGCAGCCT
GGGCAATCTGAAGAAAGAGACATCTGATGGGGAAAAGGAAACTATTCAGAAGACTTCAGAGGACAGAGCT
CCGGCAGAAAGCAGGCCATTTGGGACCCTTCCTCCCAGGCCCCCAGGGCAGGACACCTCCATGGATGACA
ACCCCTTCGGCACTCGAAAAGTCAGATCTTCCTTTGGCCGGGGCTTTTTTAAAATCAAAAGTAACAAGAG
AACAGCAAGTGCACCAAACTTAGCTGAAACAGAAAAAGAGACAGCAGAGCACCTAGATCTGGCTGGTGCT
TCTTCTCGGCCAAAAGATTCACAGAGGAACAGTCCCTTCCAGATACCGCCTCCATCTCCAGATTCCAAAA
AGAAATCCAGAGGTATCATGAAACTCTTTGGAAAACTTAGGAGAAGTCAATCAACTACATTCAACCCAGA
TGACATGTCTGAGCCTGAATTCAAAAGAGGAGGGACAAGGGCAACCGCGGGGCCCCGATTAGGTTGGTCT
CGAGACTTGGGACAGTCTAACAGTGACTTGGATATGCCATTTGCCAAGTGGACCAAGGAGCAGGTTTGCA
ATTGGCTGATGGAACAGGGCTTGGGCTCGTACCTGAATTCTGGCAAGCACTGGATTGCATCTGGCCAAAC
GCTTTTGCAGGCTTCTCAACAAGATCTAGAGAAGGAACTTGGAATCAAGCATTCACTTCATCGAAAGAAA
CTCCAGCTAGCACTCCAAGCCCTGGGATCTGAAGAAGAAACCAATCATGGGAAGCTGGATTTCAACTGGG
TCACTAGATGGTTGGATGACATTGGCCTCCCTCAATATAAGACCCAGTTTGATGAAGGACGGGTTGATGG
TCGAATGCTACATTACATGACTGTTGATGACTTACTGTCTCTGAAGGTTGTAAGTGTGCTACACCATCTC
AGTATCAAAAGGGCCATCCAGGTCCTGAGGATCAATAACTTTGAACCAAACTGTCTACGGAGGCGGCCAT
CTGATGAGAATACCATCGCCCCATCAGAAGTTCAGAAGTGGACTAACCATCGAGTGATGGAGTGGCTGCG
CTCCGTGGACTTGGCAGAATATGCGCCCAATCTCAGAGGCAGTGGTGTCCATGGTGGGCTCATGGTTCTA
GAGCCTCGTTTTAACGTAGAAACAATGGCTCAGTTATTGAACATCCCACCCAATAAGACTTTGCTGCGAA
GACATTTGGCCACTCATTTCAACCTTCTGATTGGGGCTGAGGCACAGCACCAGAAGCGAGATGCCATGGA
GCTGCCGGATTATGTACTTCTAACAGCTACTGCCAAAGTGAAGCCAAAGAAACTTGCCTTTAGCAATTTT
GGGAATTTGAGAAAGAAGAAACAGGAAGATGGTGAAGAATATGTTTGTCCAATGGAATTGGGACAGGCAT
CAGGAAGTGCATCTAAGAAAGGATTTAAACCTGGTTTGGATATGCGCCTGTATGAGGAAGATGATTTGGA
CCGGTTAGAGCAGATGGAAGATTCAGAAGGGACAGTGAGACAGATAGGTGCATTCTCTGAAGGCATCAAC
AATCTGACGCACATGTTAAAAGAAGATGACATGTTTAAAGATTTTGCTGCCCGTTCCCCCAGTGCCAGCA
TTACAGATGAAGACTCAAACGTTTGA

Translation (1011 aa):
MMSDASDMLAAALEQMDGIIAGSKALEYSNGIFDCQSPTSPFMGSLRALHLVEDLRGLLEMMETDEKEGL
RCQIPDSTAETLVEWLQSQMTNGHLPGNGDVYQERLARLENDKESLVLQVSVLTDQVEAQGEKIRDLEFC
LEEHREKVNATEEMLQQELLSRTSLETQKLDLMAEISNLKLKLTAVEKDRLDYEDKFRDTEGLIQEINDL
RLKVSEMDSERLQYEKKLKSTKSLMAKLSSMKIKVGQMQYEKQRMEQKWESLKDELASLKEQLEEKESEV
KRLQEKLVCKMKGEGVEIVDRDIEVQKMKKAVESLMAANEEKDRKIEDLRQCLNRYKKMQDTVVLAQGKD
GEYEELLNSSSISSLLDAQGFSDLEKSPSPTPVMGSPSCDPFNTSVPEEFHTTILQVSIPSLLPATVSME
TSEKSKLTPKPETSFEENDGNIILGATVDTQLCDKLLTSSLQKSSSLGNLKKETSDGEKETIQKTSEDRA
PAESRPFGTLPPRPPGQDTSMDDNPFGTRKVRSSFGRGFFKIKSNKRTASAPNLAETEKETAEHLDLAGA
SSRPKDSQRNSPFQIPPPSPDSKKKSRGIMKLFGKLRRSQSTTFNPDDMSEPEFKRGGTRATAGPRLGWS
RDLGQSNSDLDMPFAKWTKEQVCNWLMEQGLGSYLNSGKHWIASGQTLLQASQQDLEKELGIKHSLHRKK
LQLALQALGSEEETNHGKLDFNWVTRWLDDIGLPQYKTQFDEGRVDGRMLHYMTVDDLLSLKVVSVLHHL
SIKRAIQVLRINNFEPNCLRRRPSDENTIAPSEVQKWTNHRVMEWLRSVDLAEYAPNLRGSGVHGGLMVL
EPRFNVETMAQLLNIPPNKTLLRRHLATHFNLLIGAEAQHQKRDAMELPDYVLLTATAKVKPKKLAFSNF
GNLRKKKQEDGEEYVCPMELGQASGSASKKGFKPGLDMRLYEEDDLDRLEQMEDSEGTVRQIGAFSEGIN
NLTHMLKEDDMFKDFAARSPSASITDEDSNV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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