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Report for CCDS55581.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55581.1 Public Homo sapiens 1 STPG1 24 110 108 CCDS HistoryNCBI Gene:90529Re-query CCDS DB by CCDS ID:55581.1Re-query CCDS DB by GeneID:90529See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55581.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000337248.9 ENSP00000337461.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000337248.9Link to Ensembl Protein Viewer:ENSP00000337461.4Re-query CCDS DB by Nucleotide ID:ENST00000337248Re-query CCDS DB by Protein ID:ENSP00000337461
Original member Current member EBI ENST00000374409.5 ENSP00000363530.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000374409.5Link to Ensembl Protein Viewer:ENSP00000363530.1Re-query CCDS DB by Nucleotide ID:ENST00000374409Re-query CCDS DB by Protein ID:ENSP00000363530
Original member Current member NCBI NM_001199012.2 NP_001185941.1 Accepted alive Link to Nucleotide Sequence:NM_001199012.2Link to Protein Sequence:NP_001185941.1Re-query CCDS DB by Nucleotide ID:NM_001199012Re-query CCDS DB by Protein ID:NP_001185941Link to BLAST:NP_001185941.1
Original member Current member NCBI NM_001199013.2 NP_001185942.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001199013.2Link to Protein Sequence:NP_001185942.1Re-query CCDS DB by Nucleotide ID:NM_001199013Re-query CCDS DB by Protein ID:NP_001185942Link to BLAST:NP_001185942.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001185941.1 334 Q5TH74-1 334 100% 0 0
NP_001185942.1 334 Q5TH74-1 334 100% 0 0

Chromosomal Locations for CCDS 55581.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 24358543 24358619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24360851 24361041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24369674 24369839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24373702 24373810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24379653 24379823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24383902 24384003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24391561 24391679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24401319 24401388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1005 nt):
ATGGACAACTCTGCACAGAAAAATGAACGCACTGGCAAACATCCCAGACGTGCCAGTGAAGTACAGAAAG
GTTTTACTGCTGCATATCCAACACAATCCTCCATTCCTTTTAAATCTCAAGCTTCAGTAATCCCAGAATC
AGAAAAAAAAGGATTCAATAGTCAAGCCAAGAGATTTCCTCATAAGAAGAATGATATCCCAGGACCTGGG
TTCTACAATGTTATTCACCAGTCACCGGTGTCCAACAGTGTCTCATTGTCCAAGAAAGGAACTTGCATGT
TTCCCTCAATGTGCGCCCGATTGGACACCATCATTTCTAAATACCCTGCAGCGAATGCATACACTATCCC
ATCGGATTTTATTTCCAAGAGAGACTTTAGTAATTCGTGTTCCAGCATGTTCCAGTTGCCAAGCTTTATG
AAAGCTCTCAAGTTTGAAACTCCTGCACCAAACTATTACAATGCCTCTGTCTCTTGCTGCAAGCAGAGAA
ACAACGTCTGTACTCGAGCCGGGTTTATGTCAAAAACCCAAAGAGGATCTTTCGCTTTTGCTGATAAAGG
ACCTCCCCCAGGGCATTATGATATCAACGAATCCCTTGTGAAGCAGTCGCCAAATACATTAATGTCTTGT
TTTAAATCAAAAACCAACCGTGGATTAAAACTGACGTCAACAGGCCCGGGACCTGGTTATTACAACCCCA
GTGATTGCACAAAAGTTCCAAAAAAGACTCTTTTCCCGAAAAACCCCATCCTGAACTTCTCTGCTCAGCC
TTCGCCTCTGCCTCCGAAGCCACCTTTCCCAGGTCCTGGTCAGTATGAGATCGTGGACTACTTAGGCCCC
CGCAAGCATTTCATCTCTAGTGCATCATTCGTGTCCAATACCAGCCGGTGGACAGCGGCGCCGCCTCAGC
CAGGCCTGCCTGGCCCAGCTACGTACAAGCCAGAGCTTCCAGGAAAGCAGTCCTTCCTCTACAACGAGGA
CAAGAAATGGATCCCGGTTCTGTAG

Translation (334 aa):
MDNSAQKNERTGKHPRRASEVQKGFTAAYPTQSSIPFKSQASVIPESEKKGFNSQAKRFPHKKNDIPGPG
FYNVIHQSPVSNSVSLSKKGTCMFPSMCARLDTIISKYPAANAYTIPSDFISKRDFSNSCSSMFQLPSFM
KALKFETPAPNYYNASVSCCKQRNNVCTRAGFMSKTQRGSFAFADKGPPPGHYDINESLVKQSPNTLMSC
FKSKTNRGLKLTSTGPGPGYYNPSDCTKVPKKTLFPKNPILNFSAQPSPLPPKPPFPGPGQYEIVDYLGP
RKHFISSASFVSNTSRWTAAPPQPGLPGPATYKPELPGKQSFLYNEDKKWIPVL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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