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Report for CCDS55039.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55039.1 Public Homo sapiens 6 CD109 24 110 108 CCDS HistoryNCBI Gene:135228Re-query CCDS DB by CCDS ID:55039.1Re-query CCDS DB by GeneID:135228See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 55039.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000422508.6 ENSP00000404475.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000422508.6Link to Ensembl Protein Viewer:ENSP00000404475.2Re-query CCDS DB by Nucleotide ID:ENST00000422508Re-query CCDS DB by Protein ID:ENSP00000404475
Original member Current member NCBI NM_001159588.3 NP_001153060.1 Accepted alive Link to Nucleotide Sequence:NM_001159588.3Link to Protein Sequence:NP_001153060.1Re-query CCDS DB by Nucleotide ID:NM_001159588Re-query CCDS DB by Protein ID:NP_001153060Link to BLAST:NP_001153060.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001153060.1 1368 Q6YHK3-2 1368 100% 0 0

Chromosomal Locations for CCDS 55039.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 73696216 73696289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 73697400 73697572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 73723251 73723279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 73736383 73736508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 73756643 73756682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 73758944 73759028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 73762384 73762480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 73762741 73762882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 73763576 73763685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 73765930 73766154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 73766759 73766860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 73766948 73767010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 73768055 73768231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 73771429 73771581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 73780424 73780498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 73781259 73781319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 73782614 73782755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 73783707 73783824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 73785364 73785477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 73787234 73787452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 73788468 73788612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 73792626 73792802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 73803220 73803301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 73806844 73807072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 73808083 73808248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 73809984 73810174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 73810992 73811147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 73812205 73812270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 73814981 73815123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 73818388 73818535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 73820461 73820563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 73823458 73823633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4107 nt):
ATGCAGGGCCCACCGCTCCTGACCGCCGCCCACCTCCTCTGCGTGTGCACCGCCGCGCTGGCCGTGGCTC
CCGGGCCTCGGTTTCTGGTGACAGCCCCAGGGATCATCAGGCCCGGAGGAAATGTGACTATTGGGGTGGA
GCTTCTGGAACACTGCCCTTCACAGGTGACTGTGAAGGCGGAGCTGCTCAAGACAGCATCAAACCTCACT
GTCTCTGTCCTGGAAGCAGAAGGAGTCTTTGAAAAAGGCTCTTTTAAGACACTTACTCTTCCATCAGACC
CCAAATCAAATTTGATCCAACAGTGGTTGTCACAACAAAGTGATCTTGGAGTCATTTCCAAAACTTTTCA
GCTATCTTCCCATCCAATACTTGGTGACTGGTCTATTCAAGTTCAAGTGAATGACCAGACATACTATCAA
TCATTTCAGGTTTCAGAATATGTATTACCAAAATTTGAAGTGACTTTGCAGACACCATTATATTGTTCTA
TGAATTCTAAGCATTTAAATGGTACCATCACGGCAAAGTATACATATGGGAAGCCAGTGAAAGGAGACGT
AACGCTTACATTTTTACCTTTATCCTTTTGGGGAAAGAAGAAAAATATTACAAAAACATTTAAGATAAAT
GGATCTGCAAACTTCTCTTTTAATGATGAAGAGATGAAAAATGTAATGGATTCTTCAAATGGACTTTCTG
AATACCTGGATCTATCTTCCCCTGGACCAGTAGAAATTTTAACCACAGTGACAGAATCAGTTACAGGTAT
TTCAAGAAATGTAAGCACTAATGTGTTCTTCAAGCAACATGATTACATCATTGAGTTTTTTGATTATACT
ACTGTCTTGAAGCCATCTCTCAACTTCACAGCCACTGTGAAGGTAACTCGTGCTGATGGCAACCAACTGA
CTCTTGAAGAAAGAAGAAATAATGTAGTCATAACAGTGACACAGAGAAACTATACTGAGTACTGGAGCGG
ATCTAACAGTGGAAATCAGAAAATGGAAGCTGTTCAGAAAATAAATTATACTGTCCCCCAAAGTGGAACT
TTTAAGATTGAATTCCCAATCCTGGAGGATTCCAGTGAGCTACAGTTGAAGGCCTATTTCCTTGGTAGTA
AAAGTAGCATGGCAGTTCATAGTCTGTTTAAGTCTCCTAGTAAGACATACATCCAACTAAAAACAAGAGA
TGAAAATATAAAGGTGGGATCGCCTTTTGAGTTGGTGGTTAGTGGCAACAAACGATTGAAGGAGTTAAGC
TATATGGTAGTATCCAGGGGACAGTTGGTGGCTGTAGGAAAACAAAATTCAACAATGTTCTCTTTAACAC
CAGAAAATTCTTGGACTCCAAAAGCCTGTGTAATTGTGTATTATATTGAAGATGATGGGGAAATTATAAG
TGATGTTCTAAAAATTCCTGTTCAGCTTGTTTTTAAAAATAAGATAAAGCTATATTGGAGTAAAGTGAAA
GCTGAACCATCTGAGAAAGTCTCTCTTAGGATCTCTGTGACACAGCCTGACTCCATAGTTGGGATTGTAG
CTGTTGACAAAAGTGTGAATCTGATGAATGCCTCTAATGATATTACAATGGAAAATGTGGTCCATGAGTT
GGAACTTTATAACACAGGATATTATTTAGGCATGTTCATGAATTCTTTTGCAGTCTTTCAGGAATGTGGA
CTCTGGGTATTGACAGATGCAAACCTCACGAAGGATTATATTGATGGTGTTTATGACAATGCAGAATATG
CTGAGAGGTTTATGGAGGAAAATGAAGGACATATTGTAGATATTCATGACTTTTCTTTGGGTAGCAGTCC
ACATGTCCGAAAGCATTTTCCAGAGACTTGGATTTGGCTAGACACCAACATGGGTTACAGGATTTACCAA
GAATTTGAAGTAACTGTACCTGATTCTATCACTTCTTGGGTGGCTACTGGTTTTGTGATCTCTGAGGACC
TGGGTCTTGGACTAACAACTACTCCAGTGGAGCTCCAAGCCTTCCAACCATTTTTCATTTTTTTGAATCT
TCCCTACTCTGTTATCAGAGGTGAAGAATTTGCTTTGGAAATAACTATATTCAATTATTTGAAAGATGCC
ACTGAGGTTAAGGTAATCATTGAGAAAAGTGACAAATTTGATATTCTAATGACTTCAAATGAAATAAATG
CCACAGGCCACCAGCAGACCCTTCTGGTTCCCAGTGAGGATGGGGCAACTGTTCTTTTTCCCATCAGGCC
AACACATCTGGGAGAAATTCCTATCACAGTCACAGCTCTTTCACCCACTGCTTCTGATGCTGTCACCCAG
ATGATTTTAGTAAAGGCTGAAGGAATAGAAAAATCATATTCACAATCCATCTTATTAGACTTGACTGACA
ATAGGCTACAGAGTACCCTGAAAACTTTGAGTTTCTCATTTCCTCCTAATACAGTGACTGGCAGTGAAAG
AGTTCAGATCACTGCAATTGGAGATGTTCTTGGTCCTTCCATCAATGGCTTAGCCTCATTGATTCGGATG
CCTTATGGCTGTGGTGAACAGAACATGATAAATTTTGCTCCAAATATTTACATTTTGGATTATCTGACTA
AAAAGAAACAACTGACAGATAATTTGAAAGAAAAAGCTCTTTCATTTATGAGGCAAGGTTACCAGAGAGA
ACTTCTCTATCAGAGGGAAGATGGCTCTTTCAGTGCTTTTGGGAATTATGACCCTTCTGGGAGCACTTGG
TTGTCAGCTTTTGTTTTAAGATGTTTCCTTGAAGCCGATCCTTACATAGATATTGATCAGAATGTGTTAC
ACAGAACATACACTTGGCTTAAAGGACATCAGAAATCCAACGGTGAATTTTGGGATCCAGGAAGAGTGAT
TCATAGTGAGCTTCAAGGTGGCAATAAAAGTCCAGTAACACTTACAGCCTATATTGTAACTTCTCTCCTG
GGATATAGAAAGTATCAGCCTAACATTGATGTGCAAGAGTCTATCCATTTTTTGGAGTCTGAATTCAGTA
GAGGAATTTCAGACAATTATACTCTAGCCCTTATAACTTATGCATTGTCATCAGTGGGGAGTCCTAAAGC
GAAGGAAGCTTTGAATATGCTGACTTGGAGAGCAGAACAAGAAGGTGGCATGCAATTCTGGGTGTCATCA
GAGTCCAAACTTTCTGACTCCTGGCAGCCACGCTCCCTGGATATTGAAGTTGCAGCCTATGCACTGCTCT
CACACTTCTTACAATTTCAGACTTCTGAGGGAATCCCAATTATGAGGTGGCTAAGCAGGCAAAGAAATAG
CTTGGGTGGTTTTGCATCTACTCAGGATACCACTGTGGCTTTAAAGGCTCTGTCTGAATTTGCAGCCCTA
ATGAATACAGAAAGGACAAATATCCAAGTGACCGTGACGGGGCCTAGCTCACCAAGTCCTGTAAAGTTTC
TGATTGACACACACAACCGCTTACTCCTTCAGACAGCAGAGCTTGCTGTGGTACAGCCAACGGCAGTTAA
TATTTCCGCAAATGGTTTTGGATTTGCTATTTGTCAGCTCAATGTTGTATATAATGTGAAGGCTTCTGGG
TCTTCTAGAAGACGAAGATCTATCCAAAATCAAGAAGCCTTTGATTTAGATGTTGCTGTAAAAGAAAATA
AAGATGATCTCAATCATGTGGATTTGAATGTGTGTACAAGCTTTTCGGGCCCGGGTAGGAGTGGCATGGC
TCTTATGGAAGTTAACCTATTAAGTGGCTTTATGGTGCCTTCAGAAGCAATTTCTCTGAGCGAGACAGTG
AAGAAAGTGGAATATGATCATGGAAAACTCAACCTCTATTTAGATTCTGTAAATGAAACCCAGTTTTGTG
TTAATATTCCTGCTGTGAGAAACTTTAAAGTTTCAAATACCCAAGATGCTTCAGTGTCCATAGTGGATTA
CTATGAGCCAAGGAGACAGGCGGTGAGAAGTTACAACTCTGAAGTGAAGCTGTCCTCCTGTGACCTTTGC
AGTGATGTCCAGGGCTGCCGTCCTTGTGAGGATGGAGCTTCAGGCTCCCATCATCACTCTTCAGTCATTT
TTATTTTCTGTTTCAAGCTTCTGTACTTTATGGAACTTTGGCTGTGA

Translation (1368 aa):
MQGPPLLTAAHLLCVCTAALAVAPGPRFLVTAPGIIRPGGNVTIGVELLEHCPSQVTVKAELLKTASNLT
VSVLEAEGVFEKGSFKTLTLPSDPKSNLIQQWLSQQSDLGVISKTFQLSSHPILGDWSIQVQVNDQTYYQ
SFQVSEYVLPKFEVTLQTPLYCSMNSKHLNGTITAKYTYGKPVKGDVTLTFLPLSFWGKKKNITKTFKIN
GSANFSFNDEEMKNVMDSSNGLSEYLDLSSPGPVEILTTVTESVTGISRNVSTNVFFKQHDYIIEFFDYT
TVLKPSLNFTATVKVTRADGNQLTLEERRNNVVITVTQRNYTEYWSGSNSGNQKMEAVQKINYTVPQSGT
FKIEFPILEDSSELQLKAYFLGSKSSMAVHSLFKSPSKTYIQLKTRDENIKVGSPFELVVSGNKRLKELS
YMVVSRGQLVAVGKQNSTMFSLTPENSWTPKACVIVYYIEDDGEIISDVLKIPVQLVFKNKIKLYWSKVK
AEPSEKVSLRISVTQPDSIVGIVAVDKSVNLMNASNDITMENVVHELELYNTGYYLGMFMNSFAVFQECG
LWVLTDANLTKDYIDGVYDNAEYAERFMEENEGHIVDIHDFSLGSSPHVRKHFPETWIWLDTNMGYRIYQ
EFEVTVPDSITSWVATGFVISEDLGLGLTTTPVELQAFQPFFIFLNLPYSVIRGEEFALEITIFNYLKDA
TEVKVIIEKSDKFDILMTSNEINATGHQQTLLVPSEDGATVLFPIRPTHLGEIPITVTALSPTASDAVTQ
MILVKAEGIEKSYSQSILLDLTDNRLQSTLKTLSFSFPPNTVTGSERVQITAIGDVLGPSINGLASLIRM
PYGCGEQNMINFAPNIYILDYLTKKKQLTDNLKEKALSFMRQGYQRELLYQREDGSFSAFGNYDPSGSTW
LSAFVLRCFLEADPYIDIDQNVLHRTYTWLKGHQKSNGEFWDPGRVIHSELQGGNKSPVTLTAYIVTSLL
GYRKYQPNIDVQESIHFLESEFSRGISDNYTLALITYALSSVGSPKAKEALNMLTWRAEQEGGMQFWVSS
ESKLSDSWQPRSLDIEVAAYALLSHFLQFQTSEGIPIMRWLSRQRNSLGGFASTQDTTVALKALSEFAAL
MNTERTNIQVTVTGPSSPSPVKFLIDTHNRLLLQTAELAVVQPTAVNISANGFGFAICQLNVVYNVKASG
SSRRRRSIQNQEAFDLDVAVKENKDDLNHVDLNVCTSFSGPGRSGMALMEVNLLSGFMVPSEAISLSETV
KKVEYDHGKLNLYLDSVNETQFCVNIPAVRNFKVSNTQDASVSIVDYYEPRRQAVRSYNSEVKLSSCDLC
SDVQGCRPCEDGASGSHHHSSVIFIFCFKLLYFMELWL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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