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Report for CCDS5475.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5475.1 Public Homo sapiens 7 SPDYE1 24 110 108 CCDS HistoryNCBI Gene:285955Re-query CCDS DB by CCDS ID:5475.1Re-query CCDS DB by GeneID:285955See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5475.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000258704.3 ENSP00000258704.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000258704.3Link to Ensembl Protein Viewer:ENSP00000258704.3Re-query CCDS DB by Nucleotide ID:ENST00000258704Re-query CCDS DB by Protein ID:ENSP00000258704
Original member Current member NCBI NM_175064.4 NP_778234.2 Accepted alive Link to Nucleotide Sequence:NM_175064.4Link to Protein Sequence:NP_778234.2Re-query CCDS DB by Nucleotide ID:NM_175064Re-query CCDS DB by Protein ID:NP_778234Link to BLAST:NP_778234.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_778234.2 336 Q8NFV5 336 100% 0 0

Chromosomal Locations for CCDS 5475.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 44001026 44001284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44002590 44002817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44003853 44003911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44005142 44005227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44007268 44007586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44007709 44007768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1011 nt):
ATGCAGAAGCATTACACAGTGGCCTGGTTTCTTTACTCAGCCCCTGGGGTAGATCCCAGCCCCCCATGTA
GGTCCCTTGGCTGGAAAAGGAAGAGGGAGTGGTCAGATGAATCTGAGGAGGAGCCGGAGAAGGAGCTCGC
CCCTGAGCCTGAGGAGACCTGGGTAGTGGAGACGCTGTGTGGGCTCAAGATGAAGCTGAAGCAACAGCGA
GTGTCACCCATCCTCCTTGAGCACCACAAGGACTTCAACAGTCAGCTTGCCCCTGGGGTAGATCCCAGCC
CCCCGCATAGGTCCTTTTGCTGGAAAAGGAAGATGGAGTGGTGGGACAAATCTGAGGAGTCGGAGGAGGA
GCCACGGAAGGTGCTCGCCCCTGAGCCTGAGGAGATCTGGGTGGCGGAGATGCTGTGTGGCCTCAAGATG
AAGCTGAAGCGACGGCGAGTGTCGCTCGTGCTCCCTGAGCACCACGAGGCCTTCAACAGGCTGCTTGAGG
ATCCTGTCATTAAAAGATTCCTGGCCTGGGACAAAGATCTGAGGGTGTCGGACAAGTATCTCCTTGCTAT
GGTCATAGCGTATTTCAGCCGAGCCGGCTTCCCCTCCTGGCAATACCAACGCCTTCATTTCTTCCTGGCT
CTCTACCTGGCCAATGACATGGAGGAGGACGACGAGGACTCCAAACAAAACATCTTCCACTTCCTGTATG
GGAAGAACCGCTCTCGCATACCCTTGCTCCGTAAGCGTCGGTTCCAGTTATACCGTTCCATGAACCCGAG
GGCCAGGAAGAACCGCTCTCACATACCCTTGGTCCGTAAGCGTCGGTTCCAGTTACGCCGTTGCATGAAC
CCGAGGGCCAGGAAGAACCGCTCTCAGATAGTCCTGTTCCAGAAACGTCGGTTCCACTTCTTCTGTTCCA
TGAGCTGCAGGGCTTGGGTTTCCCCAGAGGAGTTGGAGGAGATCCAGGCTTATGACCCAGAGCACTGGGT
GTGGGCGCGAGATCGCGCTCGCCTTTCCTAG

Translation (336 aa):
MQKHYTVAWFLYSAPGVDPSPPCRSLGWKRKREWSDESEEEPEKELAPEPEETWVVETLCGLKMKLKQQR
VSPILLEHHKDFNSQLAPGVDPSPPHRSFCWKRKMEWWDKSEESEEEPRKVLAPEPEEIWVAEMLCGLKM
KLKRRRVSLVLPEHHEAFNRLLEDPVIKRFLAWDKDLRVSDKYLLAMVIAYFSRAGFPSWQYQRLHFFLA
LYLANDMEEDDEDSKQNIFHFLYGKNRSRIPLLRKRRFQLYRSMNPRARKNRSHIPLVRKRRFQLRRCMN
PRARKNRSQIVLFQKRRFHFFCSMSCRAWVSPEELEEIQAYDPEHWVWARDRARLS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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