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Report for CCDS54684.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54684.1 Public Homo sapiens 3 DNAJC19 24 110 108 CCDS HistoryNCBI Gene:131118Re-query CCDS DB by CCDS ID:54684.1Re-query CCDS DB by GeneID:131118See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54684.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000479269.5 ENSP00000419191.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000479269.5Link to Ensembl Protein Viewer:ENSP00000419191.1Re-query CCDS DB by Nucleotide ID:ENST00000479269Re-query CCDS DB by Protein ID:ENSP00000419191
Original member Current member EBI ENST00000491873.5 ENSP00000420767.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000491873.5Link to Ensembl Protein Viewer:ENSP00000420767.1Re-query CCDS DB by Nucleotide ID:ENST00000491873Re-query CCDS DB by Protein ID:ENSP00000420767
Original member Current member NCBI NM_001190233.2 NP_001177162.1 Accepted alive Link to Nucleotide Sequence:NM_001190233.2Link to Protein Sequence:NP_001177162.1Re-query CCDS DB by Nucleotide ID:NM_001190233Re-query CCDS DB by Protein ID:NP_001177162Link to BLAST:NP_001177162.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001177162.1 91 Q96DA6-2 91 100% 0 0

Chromosomal Locations for CCDS 54684.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 180984640 180984710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 180985926 180985996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 180986943 180987022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 180988023 180988076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (276 nt):
ATGAAGCATATGGAGCCTCAAGTAAAACAAGTTTTTCAAAGCCTACCAAAATCTGCCTTCAGTGGTGGCT
ATTATAGAGGTGGGTTTGAACCCAAAATGACAAAACGGGAAGCAGCATTAATACTAGGTGTAAGCCCTAC
TGCCAATAAAGGGAAAATAAGAGATGCTCATCGACGAATTATGCTTTTAAATCATCCTGACAAAGGAGGA
TCTCCTTATATAGCAGCCAAAATCAATGAAGCTAAAGATTTACTAGAAGGTCAAGCTAAAAAATGA

Translation (91 aa):
MKHMEPQVKQVFQSLPKSAFSGGYYRGGFEPKMTKREAALILGVSPTANKGKIRDAHRRIMLLNHPDKGG
SPYIAAKINEAKDLLEGQAKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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