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Report for CCDS54666.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54666.2 Public Homo sapiens 3 MFSD1 24 110 108 CCDS HistoryNCBI Gene:64747Re-query CCDS DB by CCDS ID:54666.2Re-query CCDS DB by GeneID:64747See the combined annotation on chromosome 3 in Sequence Viewer

Public Note for CCDS 54666.1
The coding region has been updated to shorten the N-terminus to one that is more supported by available conservation data.

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 54666.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000651862.1 ENSP00000498818.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000651862.1Link to Ensembl Protein Viewer:ENSP00000498818.1Re-query CCDS DB by Nucleotide ID:ENST00000651862Re-query CCDS DB by Protein ID:ENSP00000498818
Original member Current member NCBI NM_001167903.3 NP_001161375.2 Accepted alive Link to Nucleotide Sequence:NM_001167903.3Link to Protein Sequence:NP_001161375.2Re-query CCDS DB by Nucleotide ID:NM_001167903Re-query CCDS DB by Protein ID:NP_001161375Link to BLAST:NP_001161375.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001161375.2 426 Q9H3U5-3 426 99.7653% 0 1

Chromosomal Locations for CCDS 54666.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 158802153 158802315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 158804323 158804371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 158807040 158807082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 158807396 158807463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 158809179 158809287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 158813965 158814067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 158819649 158819747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 158820215 158820326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 158821597 158821653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 158821984 158822140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 158823428 158823525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 158824124 158824236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 158826015 158826062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 158827280 158827337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 158828979 158828982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1281 nt):
ATGGAGGAGGAGGATGAGGAAGCGCGGGCGCTCCTGGCAGGCGGCCCTGACGAGGCCGACAGAGGTGCCC
CGGCCGCCCCTGGAGCCCTGCCGGCCCTCTGCGACCCCAGTCGCCTGGCGCACCGGCTTTTGGTGCTGTT
ACTGATGTGCTTCCTTGGCTTTGCTATTTTTGCTATGATAATCCTGCTGCCCTTCAGACTCAAGTTAAAC
GAATGGGGCACAATCATTTTTAGCTGCTTTGTTTGCATTGGACAGGTTGTTTTTGCCCTGGGTGGAATAT
TTAATGCTTTTTGGCTGATGGAATTTGGAAGATTTGTATTTGGGATTGGTGGCGAGTCCTTAGCAGTTGC
CCAGAATACATATGCTGTGAGCTGGTTTAAAGGCAAAGAATTAAACCTGGTGTTTGGACTTCAACTTAGC
ATGGCTAGAATTGGAAGTACAGTAAACATGAACCTCATGGGATGGCTGTATTCTAAGATTGAAGCTTTGT
TAGGTTCTGCTGGTCACACAACCCTCGGGATCACACTTATGATTGGGGGTATAACGTGTATTCTTTCACT
AATCTGTGCCTTGGCTCTTGCCTACTTGGATCAGAGAGCAGAGAGAATCCTTCATAAAGAACAAGGAAAA
ACAGGTGAAGTTATTAAATTAACTGATGTAAAGGACTTCTCCTTACCCCTGTGGCTTATATTTATCATCT
GTGTCTGCTATTATGTTGCTGTGTTCCCTTTTATTGGACTTGGGAAAGTTTTCTTTACAGAGAAATTTGG
ATTTTCTTCCCAGGCAGCAAGTGCAATTAACAGTGTTGTATATGTCATATCAGCTCCCATGTCCCCGGTG
TTTGGGCTCCTGGTGGATAAAACAGGGAAGAACATCATCTGGGTTCTTTGCGCAGTAGCAGCCACTCTTG
TGTCCCACATGATGCTGGCCTTTACGATGTGGAACCCTTGGATTGCTATGTGTCTTCTGGGACTCTCCTA
CTCATTGCTTGCCTGTGCATTGTGGCCAATGGTGGCATTTGTAGTTCCTGAACATCAGCTGGGAACTGCA
TATGGCTTCATGCAGTCCATTCAGAATCTTGGGTTGGCCATCATTTCCATCATTGCTGGTATGATACTGG
ATTCTCGGGGGTATTTGTTTTTGGAAGTGTTCTTCATTGCCTGTGTTTCTTTGTCACTTTTATCTGTGGT
CTTACTCTATTTGGTGAATCGTGCCCAGGGTGGGAACCTAAATTATTCTGCAAGACAAAGGGAAGAAATA
AAATTTTCCCATACTGAATGA

Translation (426 aa):
MEEEDEEARALLAGGPDEADRGAPAAPGALPALCDPSRLAHRLLVLLLMCFLGFAIFAMIILLPFRLKLN
EWGTIIFSCFVCIGQVVFALGGIFNAFWLMEFGRFVFGIGGESLAVAQNTYAVSWFKGKELNLVFGLQLS
MARIGSTVNMNLMGWLYSKIEALLGSAGHTTLGITLMIGGITCILSLICALALAYLDQRAERILHKEQGK
TGEVIKLTDVKDFSLPLWLIFIICVCYYVAVFPFIGLGKVFFTEKFGFSSQAASAINSVVYVISAPMSPV
FGLLVDKTGKNIIWVLCAVAATLVSHMMLAFTMWNPWIAMCLLGLSYSLLACALWPMVAFVVPEHQLGTA
YGFMQSIQNLGLAIISIIAGMILDSRGYLFLEVFFIACVSLSLLSVVLLYLVNRAQGGNLNYSARQREEI
KFSHTE


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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