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Report for CCDS54614.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54614.1 Public Homo sapiens 3 CADM2 24 110 108 CCDS HistoryNCBI Gene:253559Re-query CCDS DB by CCDS ID:54614.1Re-query CCDS DB by GeneID:253559See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54614.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000407528.6 ENSP00000384575.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000407528.6Link to Ensembl Protein Viewer:ENSP00000384575.2Re-query CCDS DB by Nucleotide ID:ENST00000407528Re-query CCDS DB by Protein ID:ENSP00000384575
Original member Current member NCBI NM_001167674.2 NP_001161146.1 Accepted alive Link to Nucleotide Sequence:NM_001167674.2Link to Protein Sequence:NP_001161146.1Re-query CCDS DB by Nucleotide ID:NM_001167674Re-query CCDS DB by Protein ID:NP_001161146Link to BLAST:NP_001161146.1
Original member Current member NCBI NM_001381964.1 NP_001368893.1 Accepted alive Link to Nucleotide Sequence:NM_001381964.1Link to Protein Sequence:NP_001368893.1Re-query CCDS DB by Nucleotide ID:NM_001381964Re-query CCDS DB by Protein ID:NP_001368893Link to BLAST:NP_001368893.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001161146.1 435 Q8N3J6-1 435 100% 0 0
NP_001368893.1 435 Q8N3J6-1 435 100% 0 0

Chromosomal Locations for CCDS 54614.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 84959608 84959668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 85802047 85802196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 85883291 85883443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 85886190 85886327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 85912373 85912543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 85935767 85935857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 85961469 85961647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 85979164 85979283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 86065605 86065730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 86066665 86066783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1308 nt):
ATGATTTGGAAACGCAGCGCCGTTCTCCGCTTCTACAGTGTCTGCGGGCTCCTGCTACAAGGCAGCCAAG
GGCAGTTTCCACTAACACAGAATGTAACCGTTGTTGAAGGTGGAACTGCAATTTTGACCTGCAGGGTTGA
TCAAAATGATAACACCTCCCTCCAGTGGTCAAATCCAGCTCAACAGACTCTGTACTTTGACGACAAGAAA
GCTTTAAGGGACAATAGGATCGAGCTGGTTCGCGCTTCCTGGCATGAATTGAGTATTAGTGTCAGTGATG
TGTCTCTCTCTGATGAAGGACAGTACACCTGTTCTTTATTTACAATGCCTGTCAAAACTTCCAAGGCATA
TCTCACCGTTCTGGGTGTTCCTGAAAAGCCTCAGATTAGTGGATTCTCATCACCAGTTATGGAGGGTGAC
TTGATGCAGCTGACTTGCAAAACATCTGGTAGTAAACCTGCAGCTGATATAAGATGGTTCAAAAATGACA
AAGAGATTAAAGATGTAAAATATTTAAAAGAAGAGGATGCAAATCGCAAGACATTCACTGTCAGCAGCAC
ACTGGACTTCCGAGTGGACCGGAGTGATGATGGAGTGGCGGTCATCTGCAGAGTAGATCACGAATCCCTC
AATGCCACCCCTCAGGTAGCCATGCAGGTGCTAGAAATACACTATACACCATCAGTTAAGATTATACCAT
CGACTCCTTTTCCACAAGAAGGACAGCCTTTAATTTTGACTTGTGAATCCAAAGGAAAACCACTGCCAGA
ACCTGTTTTGTGGACAAAGGATGGCGGAGAATTACCAGATCCTGACCGAATGGTTGTGAGTGGTAGGGAG
CTAAACATTCTTTTCCTGAACAAAACGGATAATGGTACATATCGATGTGAAGCCACAAACACCATTGGCC
AAAGCAGTGCGGAATATGTTCTCATTGTGCATGATGTTCCCAACACTTTGCTTCCCACTACTATCATCCC
CTCCCTTACCACTGCAACAGTCACAACCACTGTAGCCATAACAACCAGCCCAACCACATCTGCAACAACC
AGCAGCATCAGAGATCCTAATGCTTTGGCTGGCCAGAATGGCCCTGACCATGCTCTCATAGGAGGAATAG
TGGCTGTAGTTGTATTTGTCACGCTGTGTTCTATCTTTCTGCTTGGTCGATATCTGGCAAGGCATAAAGG
AACGTATTTAACAAATGAAGCTAAAGGAGCTGAAGATGCACCAGATGCTGATACAGCCATTATCAATGCT
GAAGGCAGCCAAGTCAATGCTGAAGAGAAAAAAGAGTATTTCATTTAA

Translation (435 aa):
MIWKRSAVLRFYSVCGLLLQGSQGQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKK
ALRDNRIELVRASWHELSISVSDVSLSDEGQYTCSLFTMPVKTSKAYLTVLGVPEKPQISGFSSPVMEGD
LMQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAVICRVDHESL
NATPQVAMQVLEIHYTPSVKIIPSTPFPQEGQPLILTCESKGKPLPEPVLWTKDGGELPDPDRMVVSGRE
LNILFLNKTDNGTYRCEATNTIGQSSAEYVLIVHDVPNTLLPTTIIPSLTTATVTTTVAITTSPTTSATT
SSIRDPNALAGQNGPDHALIGGIVAVVVFVTLCSIFLLGRYLARHKGTYLTNEAKGAEDAPDADTAIINA
EGSQVNAEEKKEYFI


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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