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Report for CCDS5461.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5461.1 Public Homo sapiens 7 CDK13 24 110 108 CCDS HistoryNCBI Gene:8621Re-query CCDS DB by CCDS ID:5461.1Re-query CCDS DB by GeneID:8621See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5461.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000181839.10 ENSP00000181839.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000181839.10Link to Ensembl Protein Viewer:ENSP00000181839.4Re-query CCDS DB by Nucleotide ID:ENST00000181839Re-query CCDS DB by Protein ID:ENSP00000181839
Original member Current member NCBI NM_003718.5 NP_003709.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003718.5Link to Protein Sequence:NP_003709.3Re-query CCDS DB by Nucleotide ID:NM_003718Re-query CCDS DB by Protein ID:NP_003709Link to BLAST:NP_003709.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003709.3 1512 Q14004-1 1512 100% 0 0

Chromosomal Locations for CCDS 5461.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 39950642 39951852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 39987599 39988258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 39997494 39997664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 39999361 39999500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 40001861 40002031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 40045836 40046025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 40047821 40047877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 40062826 40062927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 40063023 40063100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 40078005 40078121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 40078720 40078851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 40088126 40088331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 40092785 40093237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 40094130 40094980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4539 nt):
ATGCCGAGCAGCTCGGACACGGCGCTGGGGGGAGGCGGGGGCCTGAGCTGGGCGGAGAAGAAGTTGGAGG
AACGCCGCAAGCGGAGGCGATTCCTGTCCCCTCAGCAGCCGCCGCTGCTGTTGCCGCTCCTGCAGCCGCA
GCTCCTGCAACCGCCGCCGCCCCCGCCGCCTCTGCTCTTCCTGGCTGCTCCCGGCACGGCCGCCGCCGCA
GCCGCCGCCGCCGCGGCCTCCTCCTCTTGCTTCAGCCCGGGCCCCCCTCTGGAGGTCAAGCGGCTGGCGA
GAGGCAAGAGGCGCGCAGGAGGGCGGCAGAAGCGGCGTCGCGGGCCCCGCGCCGGGCAGGAGGCGGAGAA
GCGTCGGGTCTTCTCGCTGCCCCAGCCGCAGCAGGACGGCGGTGGCGGTGCTAGTAGCGGCGGGGGTGTG
ACCCCGCTGGTGGAATACGAGGATGTGAGCTCCCAGTCCGAGCAGGGGCTGCTGCTGGGGGGGGCCAGCG
CGGCAACGGCGGCGACGGCTGCCGGGGGAACGGGGGGCAGCGGCGGGAGTCCGGCCTCCTCCTCCGGCAC
CCAGCGGCGCGGGGAGGGGTCGGAGCGCAGGCCCCGCCGGGACCGCCGCAGCAGCAGTGGCCGCAGCAAG
GAGCGCCACCGCGAGCACCGGCGGCGGGATGGGCAGCGCGGTGGCAGCGAGGCCTCCAAGTCCCGCAGCC
GCCACAGCCACAGCGGCGAGGAACGGGCCGAGGTCGCCAAGAGCGGCAGCAGCAGCAGCAGCGGCGGCCG
CCGGAAAAGCGCTTCGGCCACATCCAGCAGCAGTAGCAGCCGCAAGGACCGGGACTCGAAGGCCCACCGC
AGCCGGACTAAGTCGTCCAAGGAGCCGCCTTCGGCCTACAAGGAACCGCCCAAGGCCTACCGGGAGGACA
AGACCGAGCCTAAGGCCTACAGGCGGCGGCGGTCCCTCAGCCCACTGGGAGGCCGGGACGACAGCCCGGT
GTCCCACAGGGCCTCTCAGAGCCTGAGGAGCCGCAAGTCCCCCAGCCCGGCAGGAGGTGGCAGCAGCCCC
TATTCTCGGCGGCTGCCGCGCTCCCCGAGCCCCTACAGTCGCCGCCGCTCCCCCAGCTACAGCCGCCACA
GCTCCTACGAGCGGGGCGGCGACGTGTCCCCTAGTCCCTACAGCAGCAGCAGCTGGCGCCGCTCTCGCAG
TCCCTACAGCCCTGTGCTCAGACGGTCTGGAAAATCCCGAAGCAGAAGCCCGTATTCATCTAGGCATTCA
AGATCTCGTAGCAGGCACAGATTGTCTAGATCCAGAAGTCGTCATTCTAGTATTTCTCCTAGCACACTAA
CTCTGAAGAGTAGCCTGGCAGCTGAATTGAACAAGAATAAAAAAGCACGAGCAGCAGAGGCAGCAAGAGC
CGCAGAAGCAGCGAAAGCTGCAGAAGCAACTAAGGCTGCTGAGGCTGCTGCCAAGGCTGCAAAAGCTTCA
AACACTTCTACACCTACCAAGGGGAACACGGAAACTAGTGCCAGTGCATCACAAACAAACCATGTGAAGG
ATGTGAAGAAAATTAAAATTGAACATGCACCTTCTCCCTCAAGTGGTGGAACTTTAAAAAATGACAAAGC
AAAAACAAAGCCACCTCTTCAGGTAACGAAGGTGGAAAATAATTTGATTGTAGATAAAGCCACCAAGAAA
GCAGTCATAGTTGGAAAGGAGAGTAAATCTGCTGCTACAAAGGAGGAATCAGTATCTCTTAAAGAGAAAA
CCAAACCACTTACACCAAGCATAGGAGCCAAGGAGAAGGAGCAACATGTAGCTTTAGTCACCTCTACATT
ACCACCGTTACCTTTGCCTCCCATGCTGCCTGAAGATAAAGAAGCTGATAGCTTACGAGGAAATATTTCA
GTAAAAGCAGTTAAAAAAGAAGTAGAAAAGAAACTCCGATGTCTTCTTGCTGATTTACCGCTGCCCCCTG
AGCTACCAGGAGGAGATGATCTTTCAAAGAGTCCAGAGGAAAAGAAAACAGCAACACAGTTACATAGTAA
AAGGAGGCCTAAAATATGTGGGCCTCGCTATGGTGAAACCAAAGAAAAAGATATTGACTGGGGAAAACGC
TGCGTGGATAAATTTGATATCATCGGAATTATTGGAGAAGGTACTTACGGACAAGTTTACAAAGCCAGGG
ATAAAGACACTGGAGAAATGGTAGCCTTAAAAAAAGTACGTCTGGATAATGAAAAGGAAGGCTTTCCAAT
TACAGCAATTCGAGAAATTAAAATTCTCCGGCAGCTTACCCATCAGAGTATTATCAATATGAAGGAAATA
GTGACTGATAAAGAAGATGCTTTGGATTTCAAGAAGGACAAAGGTGCATTTTATCTGGTGTTTGAATATA
TGGACCATGATCTGATGGGACTACTGGAATCAGGCTTGGTTCATTTTAATGAAAATCACATAAAGTCATT
TATGAGACAGCTCATGGAGGGTCTGGATTATTGTCATAAGAAGAACTTTTTGCATAGAGATATTAAATGT
TCCAATATCCTTCTAAATAATAGAGGGCAGATAAAACTTGCAGACTTTGGACTTGCTCGATTGTATAGCT
CAGAAGAAAGTCGGCCGTATACTAACAAGGTAATTACTTTATGGTACCGTCCACCTGAACTGCTACTGGG
AGAAGAACGATACACACCAGCCATTGATGTATGGAGCTGTGGCTGTATCCTTGGCGAACTCTTCACTAAA
AAACCTATATTTCAAGCAAATCAGGAACTTGCACAACTAGAATTAATAAGCCGAATATGTGGGAGTCCAT
GTCCTGCAGTGTGGCCTGATGTAATCAAACTACCATATTTCAACACCATGAAACCAAAGAAGCAATATCG
TCGAAAGTTAAGAGAAGAATTTGTTTTTATTCCTGCAGCTGCGCTAGACTTATTTGATTACATGCTTGCC
TTGGATCCTAGTAAGCGCTGCACTGCTGAACAGGCTCTTCAGTGCGAGTTCCTCCGAGATGTGGAACCCT
CAAAAATGCCTCCACCAGATCTCCCTTTATGGCAAGATTGTCATGAGTTATGGAGTAAAAAGCGAAGAAG
ACAGAAGCAGATGGGCATGACTGATGATGTTTCCACAATTAAAGCCCCCAGGAAGGACTTGTCTCTGGGC
TTGGATGACAGCAGAACCAACACACCCCAGGGTGTGCTGCCATCTTCACAGCTGAAATCTCAGGGCAGCT
CAAATGTGGCACCTGTAAAAACAGGCCCTGGACAGCACTTAAACCACAGTGAATTGGCAATTCTACTAAA
CCTACTACAATCTAAAACAAGTGTTAATATGGCTGATTTTGTCCAAGTGTTGAACATTAAGGTAAACTCT
GAGACTCAACAGCAGCTAAATAAAATAAACCTTCCTGCTGGAATTTTGGCAACAGGTGAAAAACAGACAG
ATCCATCAACACCACAACAGGAGTCTTCGAAACCGTTGGGAGGAATTCAGCCTTCTTCTCAGACCATCCA
GCCTAAAGTGGAGACTGATGCTGCCCAGGCGGCTGTGCAGAGTGCATTTGCAGTTCTGTTGACTCAGTTA
ATAAAGGCTCAGCAGTCAAAGCAGAAAGATGTGCTACTAGAAGAGAGGGAAAATGGATCGGGACATGAAG
CGTCATTACAACTCAGGCCACCTCCAGAACCTAGCACTCCGGTGTCGGGACAAGATGACCTCATCCAGCA
TCAAGATATGAGGATCTTGGAGCTAACGCCAGAACCAGACCGGCCTCGAATTCTGCCTCCTGACCAACGA
CCTCCCGAGCCTCCTGAACCACCACCAGTCACTGAGGAAGATCTAGATTATCGGACAGAAAACCAGCATG
TACCCACCACCAGTTCTTCATTAACTGACCCTCATGCCGGAGTGAAGGCAGCCCTGTTACAGCTGCTTGC
TCAGCATCAGCCCCAGGATGACCCCAAAAGAGAAGGTGGGATTGATTATCAAGCAGGAGACACTTACGTG
TCCACTTCAGACTACAAGGACAACTTTGGATCCTCTTCTTTCTCTTCTGCTCCTTATGTTAGCAATGATG
GTCTAGGAAGCAGTTCTGCTCCACCACTAGAACGACGTAGTTTCATTGGAAATTCAGATATTCAGTCTTT
GGATAACTACAGTACTGCTTCATCTCATTCTGGTGGTCCACCTCAGCCTTCTGCCTTTTCTGAGTCATTT
CCCAGTTCAGTAGCTGGATATGGAGACATTTACCTCAATGCTGGTCCCATGTTGTTTAGTGGAGACAAGG
ACCATAGATTTGAATATAGCCATGGTCCTATTGCAGTCCTGGCAAACAGCAGTGACCCTTCCACGGGGCC
AGAGAGTACTCATCCTTTGCCAGCAAAGATGCACAACTATAACTATGGTGGTAACTTACAGGAAAATCCG
AGTGGCCCCAGCCTCATGCATGGACAGACCTGGACTTCTCCTGCCCAAGGACCTGGATATTCACAAGGAT
ACAGGGGACATATTAGCACATCAACTGGCAGAGGCAGAGGCAGAGGGTTACCATACTGA

Translation (1512 aa):
MPSSSDTALGGGGGLSWAEKKLEERRKRRRFLSPQQPPLLLPLLQPQLLQPPPPPPPLLFLAAPGTAAAA
AAAAAASSSCFSPGPPLEVKRLARGKRRAGGRQKRRRGPRAGQEAEKRRVFSLPQPQQDGGGGASSGGGV
TPLVEYEDVSSQSEQGLLLGGASAATAATAAGGTGGSGGSPASSSGTQRRGEGSERRPRRDRRSSSGRSK
ERHREHRRRDGQRGGSEASKSRSRHSHSGEERAEVAKSGSSSSSGGRRKSASATSSSSSSRKDRDSKAHR
SRTKSSKEPPSAYKEPPKAYREDKTEPKAYRRRRSLSPLGGRDDSPVSHRASQSLRSRKSPSPAGGGSSP
YSRRLPRSPSPYSRRRSPSYSRHSSYERGGDVSPSPYSSSSWRRSRSPYSPVLRRSGKSRSRSPYSSRHS
RSRSRHRLSRSRSRHSSISPSTLTLKSSLAAELNKNKKARAAEAARAAEAAKAAEATKAAEAAAKAAKAS
NTSTPTKGNTETSASASQTNHVKDVKKIKIEHAPSPSSGGTLKNDKAKTKPPLQVTKVENNLIVDKATKK
AVIVGKESKSAATKEESVSLKEKTKPLTPSIGAKEKEQHVALVTSTLPPLPLPPMLPEDKEADSLRGNIS
VKAVKKEVEKKLRCLLADLPLPPELPGGDDLSKSPEEKKTATQLHSKRRPKICGPRYGETKEKDIDWGKR
CVDKFDIIGIIGEGTYGQVYKARDKDTGEMVALKKVRLDNEKEGFPITAIREIKILRQLTHQSIINMKEI
VTDKEDALDFKKDKGAFYLVFEYMDHDLMGLLESGLVHFNENHIKSFMRQLMEGLDYCHKKNFLHRDIKC
SNILLNNRGQIKLADFGLARLYSSEESRPYTNKVITLWYRPPELLLGEERYTPAIDVWSCGCILGELFTK
KPIFQANQELAQLELISRICGSPCPAVWPDVIKLPYFNTMKPKKQYRRKLREEFVFIPAAALDLFDYMLA
LDPSKRCTAEQALQCEFLRDVEPSKMPPPDLPLWQDCHELWSKKRRRQKQMGMTDDVSTIKAPRKDLSLG
LDDSRTNTPQGVLPSSQLKSQGSSNVAPVKTGPGQHLNHSELAILLNLLQSKTSVNMADFVQVLNIKVNS
ETQQQLNKINLPAGILATGEKQTDPSTPQQESSKPLGGIQPSSQTIQPKVETDAAQAAVQSAFAVLLTQL
IKAQQSKQKDVLLEERENGSGHEASLQLRPPPEPSTPVSGQDDLIQHQDMRILELTPEPDRPRILPPDQR
PPEPPEPPPVTEEDLDYRTENQHVPTTSSSLTDPHAGVKAALLQLLAQHQPQDDPKREGGIDYQAGDTYV
STSDYKDNFGSSSFSSAPYVSNDGLGSSSAPPLERRSFIGNSDIQSLDNYSTASSHSGGPPQPSAFSESF
PSSVAGYGDIYLNAGPMLFSGDKDHRFEYSHGPIAVLANSSDPSTGPESTHPLPAKMHNYNYGGNLQENP
SGPSLMHGQTWTSPAQGPGYSQGYRGHISTSTGRGRGRGLPY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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