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Report for CCDS54367.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54367.1 Public Homo sapiens 2 CCT7 24 110 108 CCDS HistoryNCBI Gene:10574Re-query CCDS DB by CCDS ID:54367.1Re-query CCDS DB by GeneID:10574See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 54367.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000539919.5 ENSP00000437824.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000539919.5Link to Ensembl Protein Viewer:ENSP00000437824.1Re-query CCDS DB by Nucleotide ID:ENST00000539919Re-query CCDS DB by Protein ID:ENSP00000437824
Original member Current member NCBI NM_001166285.2 NP_001159757.1 Accepted alive Link to Nucleotide Sequence:NM_001166285.2Link to Protein Sequence:NP_001159757.1Re-query CCDS DB by Nucleotide ID:NM_001166285Re-query CCDS DB by Protein ID:NP_001159757Link to BLAST:NP_001159757.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001159757.1 499 Q99832-3 499 100% 0 0

Chromosomal Locations for CCDS 54367.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 73239769 73239796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 73240437 73240543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 73243004 73243129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 73243997 73244049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 73244544 73244715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 73247762 73247926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 73248991 73249179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 73249819 73249916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 73250306 73250438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 73251226 73251432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 73252640 73252861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1500 nt):
ATGGACAAGCTTATTGTAGATGGCAGAGGCAAAGCAACAATTTCTAATGATGGGGCCACAATTCTGAAAC
TTCTTGATGTTGTCCATCCTGCAGCAAAGACTTTGGTAGACATTGCCAAATCCCAAGATGCTGAGGTGGG
TGATGGCACCACCTCAGTGACCTTGCTGGCTGCAGAGTTTCTGAAGCAGGTGAAACCCTATGTGGAGGAA
GGTTTACACCCCCAGATCATCATTCGAGCTTTCCGCACAGCCACCCAGCTGGCAGTTAACAAGATCAAAG
AGATTGCTGTGACCGTGAAGAAGGCAGATAAAGTGGAGCAGAGGAAGCTGCTGGAAAAGTGTGCCATGAC
CGCTCTGAGCTCCAAGCTGATCTCCCAGCAGAAAGCTTTCTTTGCTAAGATGGTGGTGGATGCAGTGATG
ATGCTCGATGATTTGCTGCAGCTTAAAATGATTGGAATCAAGAAGGTACAGGGTGGAGCCCTCGAGGATT
CTCAGCTGGTAGCTGGTGTTGCATTCAAGAAGACTTTCTCTTACGCTGGGTTTGAAATGCAACCCAAAAA
GTACCACAATCCCAAGATTGCCCTTTTGAATGTCGAGCTCGAGTTGAAAGCTGAGAAAGACAATGCTGAG
ATAAGAGTCCACACAGTTGAGGATTATCAGGCAATTGTTGATGCTGAGTGGAACATTCTCTATGACAAGT
TAGAGAAGATCCATCATTCTGGAGCCAAAGTTGTCTTGTCCAAACTCCCCATTGGGGATGTGGCCACCCA
GTACTTTGCTGACAGGGACATGTTCTGTGCTGGCCGAGTACCTGAGGAGGATCTGAAGAGGACAATGATG
GCCTGTGGAGGCTCAATCCAGACCAGTGTGAATGCTCTGTCAGCAGATGTGCTGGGTCGATGCCAGGTGT
TTGAAGAGACCCAGATTGGAGGCGAGAGGTACAATTTTTTTACTGGCTGCCCCAAGGCCAAGACATGCAC
CTTCATTCTCCGTGGCGGCGCCGAGCAGTTTATGGAGGAGACAGAGCGGTCCCTGCATGATGCCATCATG
ATCGTCAGGAGGGCCATCAAGAATGATTCAGTGGTGGCTGGTGGCGGGGCCATTGAGATGGAACTCTCCA
AGTACCTGCGGGATTACTCAAGGACTATTCCAGGAAAACAGCAGCTGTTGATTGGGGCATATGCCAAGGC
CTTGGAGATTATCCCACGCCAGCTGTGTGACAATGCTGGCTTTGATGCCACAAACATTCTCAACAAGCTG
CGGGCTCGGCATGCCCAGGGGGGTACATGGTATGGAGTAGACATCAACAACGAGGACATTGCTGACAACT
TTGAAGCTTTCGTGTGGGAGCCAGCTATGGTGCGGATCAATGCGCTGACAGCAGCCTCTGAGGCTGCGTG
CCTGATCGTGTCTGTAGATGAAACCATCAAGAACCCCCGCTCGACTGTGGATGCTCCCACAGCAGCAGGC
CGGGGCCGTGGTCGTGGCCGCCCCCACTGA

Translation (499 aa):
MDKLIVDGRGKATISNDGATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEE
GLHPQIIIRAFRTATQLAVNKIKEIAVTVKKADKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVVDAVM
MLDDLLQLKMIGIKKVQGGALEDSQLVAGVAFKKTFSYAGFEMQPKKYHNPKIALLNVELELKAEKDNAE
IRVHTVEDYQAIVDAEWNILYDKLEKIHHSGAKVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMM
ACGGSIQTSVNALSADVLGRCQVFEETQIGGERYNFFTGCPKAKTCTFILRGGAEQFMEETERSLHDAIM
IVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKL
RARHAQGGTWYGVDINNEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIKNPRSTVDAPTAAG
RGRGRGRPH


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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