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Report for CCDS53892.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53892.1 Public Homo sapiens 14 NPAS3 24 110 108 CCDS HistoryNCBI Gene:64067Re-query CCDS DB by CCDS ID:53892.1Re-query CCDS DB by GeneID:64067See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53892.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000357798.9 ENSP00000350446.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000357798.9Link to Ensembl Protein Viewer:ENSP00000350446.5Re-query CCDS DB by Nucleotide ID:ENST00000357798Re-query CCDS DB by Protein ID:ENSP00000350446
Original member Current member NCBI NM_173159.3 NP_775182.1 Accepted alive Link to Nucleotide Sequence:NM_173159.3Link to Protein Sequence:NP_775182.1Re-query CCDS DB by Nucleotide ID:NM_173159Re-query CCDS DB by Protein ID:NP_775182Link to BLAST:NP_775182.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_775182.1 920 Q8IXF0-3 920 100% 0 0

Chromosomal Locations for CCDS 53892.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 32939317 32939366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 33215182 33215426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 33215537 33215587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 33367186 33367268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 33560121 33560210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 33676211 33676385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 33735214 33735332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 33774337 33774530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 33778466 33778572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 33793897 33794044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 33797457 33797581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 33799734 33801109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2763 nt):
ATGGCGCCCACCAAGCCCAGCTTTCAGCAGGATCCTTCCAGGCGAGAACGTTTACAAGCATTGAGAAAGG
AGAAATCCCGAGATGCTGCTCGCTCCCGCCGGGGAAAAGAAAACTTTGAGTTCTATGAATTGGCCAAGTT
GTTGCCTCTTCCTGCAGCCATTACCAGCCAGCTCGACAAGGCATCCATCATTCGACTTACAATTAGCTAT
CTGAAAATGAGGGACTTTGCTAACCAGGGGGACCCTCCGTGGAACTTGCGAATGGAAGGCCCTCCACCTA
ACACATCAGTAAAAGGGATACAAATGTGGAAATCTGAACTCTGCATGAGAAAGACACCATGTGAAGTTAT
AGGTGCACAGCGAAGGAGAAGCCCCAGTGCACTAGCCATTGAAGTATTTGAAGCACATTTGGGAAGCCAC
ATTTTGCAGTCCCTGGATGGCTTTGTATTTGCACTAAATCAGGAAGGAAAATTTTTGTACATTTCCGAAA
CAGTCTCCATCTACCTAGGCCTCTCACAAGTGGAGCTGACAGGCAGCAGTGTCTTTGACTATGTCCACCC
CGGAGATCACGTGGAGATGGCTGAGCAGCTGGGCATGAAGCTCCCCCCTGGGCGGGGTCTCCTGTCACAG
GGCACTGCTGAGGACGGAGCCAGCTCAGCATCTTCCTCCTCTCAGTCGGAGACCCCCGAGCCAGTGGAGT
CAACCAGCCCCAGTCTGCTAACCACTGACAACACTCTTGAGCGTTCCTTTTTCATCCGAATGAAATCTAC
TCTGACCAAACGCGGTGTGCACATCAAATCATCAGGATATAAGGTGATTCACATAACAGGCCGGCTACGC
CTGAGAGTGTCGCTGTCCCACGGGAGGACCGTCCCCAGCCAAATCATGGGTCTCGTGGTTGTTGCGCATG
CCTTGCCTCCCCCTACGATCAATGAAGTCAGAATTGACTGCCATATGTTCGTCACTCGAGTAAATATGGA
CCTCAATATCATTTACTGTGAAAATAGGATTAGTGATTATATGGATCTGACCCCTGTAGATATCGTAGGG
AAGAGATGCTACCACTTCATCCATGCTGAAGACGTGGAGGGCATCAGGCACAGTCACTTGGACTTGCTGA
ATAAGGGTCAGTGTGTGACAAAGTACTATCGCTGGATGCAGAAGAACGGAGGATATATTTGGATACAGTC
CAGTGCCACCATAGCTATTAATGCCAAGAATGCAAATGAAAAGAATATCATCTGGGTGAATTACCTTCTT
AGCAATCCTGAGTACAAGGACACACCCATGGACATCGCACAGCTCCCCCATCTGCCGGAGAAAACTTCCG
AATCCTCGGAGACATCCGACTCTGAGTCAGACTCTAAAGACACCTCAGGTATTACAGAGGACAACGAGAA
CTCCAAGTCCGACGAGAAGGGGAACCAGTCCGAGAACAGCGAAGACCCGGAGCCCGACCGGAAGAAGTCG
GGCAACGCGTGTGACAACGACATGAACTGCAACGACGACGGCCACAGCTCCAGTAACCCGGACAGCCGCG
ACAGCGACGACAGCTTCGAGCACTCGGACTTTGAGAACCCCAAGGCGGGCGAGGACGGCTTCGGTGCTCT
GGGCGCGATGCAGATCAAGGTGGAGCGCTACGTGGAGAGCGAGTCGGACCTGCGGCTGCAGAACTGCGAG
TCACTCACGTCCGACAGCGCCAAGGACTCGGACAGCGCAGGCGAGGCGGGCGCGCAGGCCTCCAGCAAGC
ACCAGAAGCGCAAGAAAAGGCGGAAACGGCAAAAGGGCGGCAGCGCCAGCCGCCGGCGCCTGTCCAGCGC
GTCGAGCCCAGGCGGCCTGGACGCGGGCCTGGTGGAGCCCCCGCGGCTGCTGTCCTCCCCCAACAGTGCC
TCGGTGCTCAAGATCAAGACGGAGATCTCAGAACCCATCAATTTCGACAATGACAGCAGCATCTGGAACT
ACCCGCCCAACCGGGAGATCTCCAGGAACGAGTCCCCCTACAGCATGACCAAGCCCCCCAGCTCTGAGCA
CTTCCCGTCCCCGCAGGGCGGCGGCGGTGGGGGTGGCGGTGGCGGGGGGCTGCACGTGGCCATTCCCGAC
TCGGTCCTCACCCCGCCCGGCGCCGACGGCGCGGCCGCCCGCAAGACTCAGTTCGGCGCCTCGGCCACCG
CGGCCCTGGCCCCCGTCGCCTCCGACCCGCTGTCACCCCCGCTCTCGGCGTCCCCGCGGGACAAGCACCC
CGGGAACGGCGGCGGGGGCGGGGGCGGGGGCGGCGGCGCGGGGGGCGGCGGCCCCAGCGCGTCCAACTCC
TTGCTGTACACTGGGGACCTGGAGGCGCTGCAGAGGTTGCAGGCGGGCAACGTCGTGCTCCCGCTGGTGC
ACAGGGTGACCGGGACCCTGGCCGCCACCAGCACGGCCGCGCAGAGGGTCTACACCACGGGCACCATCCG
CTACGCGCCCGCCGAGGTGACCCTGGCCATGCAGAGCAACCTGCTGCCCAACGCGCACGCTGTTAACTTC
GTGGACGTTAACAGCCCCGGCTTTGGCCTCGACCCCAAGACGCCCATGGAGATGCTCTACCACCACGTGC
ACCGGCTCAACATGTCAGGACCGTTCGGCGGCGCAGTGAGCGCAGCTAGCCTGACGCAGATGCCCGCCGG
CAACGTGTTCACCACGGCCGAGGGACTCTTCTCCACGCTGCCCTTCCCCGTCTACAGCAACGGCATCCAC
GCGGCACAGACTCTGGAGCGCAAGGAGGACTGA

Translation (920 aa):
MAPTKPSFQQDPSRRERLQALRKEKSRDAARSRRGKENFEFYELAKLLPLPAAITSQLDKASIIRLTISY
LKMRDFANQGDPPWNLRMEGPPPNTSVKGIQMWKSELCMRKTPCEVIGAQRRRSPSALAIEVFEAHLGSH
ILQSLDGFVFALNQEGKFLYISETVSIYLGLSQVELTGSSVFDYVHPGDHVEMAEQLGMKLPPGRGLLSQ
GTAEDGASSASSSSQSETPEPVESTSPSLLTTDNTLERSFFIRMKSTLTKRGVHIKSSGYKVIHITGRLR
LRVSLSHGRTVPSQIMGLVVVAHALPPPTINEVRIDCHMFVTRVNMDLNIIYCENRISDYMDLTPVDIVG
KRCYHFIHAEDVEGIRHSHLDLLNKGQCVTKYYRWMQKNGGYIWIQSSATIAINAKNANEKNIIWVNYLL
SNPEYKDTPMDIAQLPHLPEKTSESSETSDSESDSKDTSGITEDNENSKSDEKGNQSENSEDPEPDRKKS
GNACDNDMNCNDDGHSSSNPDSRDSDDSFEHSDFENPKAGEDGFGALGAMQIKVERYVESESDLRLQNCE
SLTSDSAKDSDSAGEAGAQASSKHQKRKKRRKRQKGGSASRRRLSSASSPGGLDAGLVEPPRLLSSPNSA
SVLKIKTEISEPINFDNDSSIWNYPPNREISRNESPYSMTKPPSSEHFPSPQGGGGGGGGGGGLHVAIPD
SVLTPPGADGAAARKTQFGASATAALAPVASDPLSPPLSASPRDKHPGNGGGGGGGGGGAGGGGPSASNS
LLYTGDLEALQRLQAGNVVLPLVHRVTGTLAATSTAAQRVYTTGTIRYAPAEVTLAMQSNLLPNAHAVNF
VDVNSPGFGLDPKTPMEMLYHHVHRLNMSGPFGGAVSAASLTQMPAGNVFTTAEGLFSTLPFPVYSNGIH
AAQTLERKED


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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