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Report for CCDS5359.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5359.1 Public Homo sapiens 7 ARL4A 24 110 108 CCDS HistoryNCBI Gene:10124Re-query CCDS DB by CCDS ID:5359.1Re-query CCDS DB by GeneID:10124See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5359.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000356797.7 ENSP00000349250.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000356797.7Link to Ensembl Protein Viewer:ENSP00000349250.3Re-query CCDS DB by Nucleotide ID:ENST00000356797Re-query CCDS DB by Protein ID:ENSP00000349250
Original member Current member EBI ENST00000396662.5 ENSP00000379897.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000396662.5Link to Ensembl Protein Viewer:ENSP00000379897.1Re-query CCDS DB by Nucleotide ID:ENST00000396662Re-query CCDS DB by Protein ID:ENSP00000379897
Original member Current member EBI ENST00000396663.2 ENSP00000379898.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000396663.2Link to Ensembl Protein Viewer:ENSP00000379898.1Re-query CCDS DB by Nucleotide ID:ENST00000396663Re-query CCDS DB by Protein ID:ENSP00000379898
Original member Current member EBI ENST00000396664.2 ENSP00000379899.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000396664.2Link to Ensembl Protein Viewer:ENSP00000379899.2Re-query CCDS DB by Nucleotide ID:ENST00000396664Re-query CCDS DB by Protein ID:ENSP00000379899
Original member Current member EBI ENST00000404894.1 ENSP00000385236.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000404894.1Link to Ensembl Protein Viewer:ENSP00000385236.1Re-query CCDS DB by Nucleotide ID:ENST00000404894Re-query CCDS DB by Protein ID:ENSP00000385236
Original member Current member EBI ENST00000651779.1 ENSP00000498350.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000651779.1Link to Ensembl Protein Viewer:ENSP00000498350.1Re-query CCDS DB by Nucleotide ID:ENST00000651779Re-query CCDS DB by Protein ID:ENSP00000498350
Original member Current member NCBI NM_001037164.3 NP_001032241.1 Accepted alive Link to Nucleotide Sequence:NM_001037164.3Link to Protein Sequence:NP_001032241.1Re-query CCDS DB by Nucleotide ID:NM_001037164Re-query CCDS DB by Protein ID:NP_001032241Link to BLAST:NP_001032241.1
Original member Current member NCBI NM_001195396.2 NP_001182325.1 Accepted alive Link to Nucleotide Sequence:NM_001195396.2Link to Protein Sequence:NP_001182325.1Re-query CCDS DB by Nucleotide ID:NM_001195396Re-query CCDS DB by Protein ID:NP_001182325Link to BLAST:NP_001182325.1
Original member Current member NCBI NM_005738.5 NP_005729.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005738.5Link to Protein Sequence:NP_005729.1Re-query CCDS DB by Nucleotide ID:NM_005738Re-query CCDS DB by Protein ID:NP_005729Link to BLAST:NP_005729.1
Original member Current member NCBI NM_212460.4 NP_997625.1 Accepted alive Link to Nucleotide Sequence:NM_212460.4Link to Protein Sequence:NP_997625.1Re-query CCDS DB by Nucleotide ID:NM_212460Re-query CCDS DB by Protein ID:NP_997625Link to BLAST:NP_997625.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001032241.1 200 P40617 200 100% 0 0
NP_001182325.1 200 P40617 200 100% 0 0
NP_005729.1 200 P40617 200 100% 0 0
NP_997625.1 200 P40617 200 100% 0 0

Chromosomal Locations for CCDS 5359.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 12688255 12688857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (603 nt):
ATGGGGAATGGGCTGTCAGACCAGACTTCTATCCTGTCCAACCTGCCTTCATTTCAGTCTTTCCACATTG
TTATTCTGGGTTTGGACTGTGCTGGAAAGACAACTGTCTTATACAGGCTGCAGTTCAATGAATTTGTAAA
TACCGTACCTACCAAAGGATTTAACACTGAGAAAATTAAGGTAACCTTGGGAAATTCTAAAACAGTCACT
TTTCACTTCTGGGATGTAGGTGGTCAGGAGAAATTAAGGCCACTGTGGAAGTCATATACCAGATGCACAG
ATGGCATTGTATTTGTTGTGGACTCTGTTGATGTCGAAAGGATGGAAGAAGCCAAAACTGAACTTCACAA
AATAACTAGGATATCAGAAAATCAGGGAGTCCCTGTACTTATAGTTGCTAACAAACAAGATTTGAGGAAC
TCATTGTCACTTTCAGAAATTGAGAAATTGTTAGCAATGGGTGAACTGAGCTCATCAACTCCTTGGCATT
TGCAGCCTACCTGTGCAATCATAGGAGATGGCCTAAAGGAAGGACTTGAGAAACTACATGATATGATCAT
TAAAAGAAGAAAAATGTTGCGGCAACAGAAAAAGAAAAGATGA

Translation (200 aa):
MGNGLSDQTSILSNLPSFQSFHIVILGLDCAGKTTVLYRLQFNEFVNTVPTKGFNTEKIKVTLGNSKTVT
FHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRISENQGVPVLIVANKQDLRN
SLSLSEIEKLLAMGELSSSTPWHLQPTCAIIGDGLKEGLEKLHDMIIKRRKMLRQQKKKR


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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