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Report for CCDS5014.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5014.1 Public Homo sapiens 6 SPACA1 24 110 108 CCDS HistoryNCBI Gene:81833Re-query CCDS DB by CCDS ID:5014.1Re-query CCDS DB by GeneID:81833See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5014.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000237201.2 ENSP00000237201.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000237201.2Link to Ensembl Protein Viewer:ENSP00000237201.1Re-query CCDS DB by Nucleotide ID:ENST00000237201Re-query CCDS DB by Protein ID:ENSP00000237201
Original member Current member NCBI NM_030960.3 NP_112222.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_030960.3Link to Protein Sequence:NP_112222.1Re-query CCDS DB by Nucleotide ID:NM_030960Re-query CCDS DB by Protein ID:NP_112222Link to BLAST:NP_112222.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_112222.1 294 Q9HBV2 294 100% 0 0

Chromosomal Locations for CCDS 5014.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 88047906 88048113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 88053946 88054002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 88057612 88057713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 88058716 88058822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 88059453 88059588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 88064099 88064219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 88066182 88066335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (885 nt):
ATGAGCCCCAGGGGCACGGGCTGCTCCGCCGGGCTGCTGATGACTGTCGGCTGGCTGCTTCTGGCGGGCC
TCCAGTCCGCGCGCGGGACCAACGTCACCGCTGCCGTCCAGGATGCCGGCCTGGCCCACGAAGGCGAGGG
CGAGGAGGAGACCGAAAACAACGACAGCGAGACCGCGGAGAACTACGCTCCGCCTGAAACCGAGGATGTT
TCAAATAGGAATGTCGTCAAAGAAGTAGAATTCGGAATGTGCACCGTTACATGTGGTATTGGTGTTAGAG
AAGTTATATTAACAAATGGATGCCCTGGTGGTGAATCCAAGTGTGTTGTACGGGTAGAAGAATGCCGTGG
ACCAACAGATTGTGGCTGGGGTAAACCAATTTCAGAAAGTCTTGAAAGTGTTAGATTGGCATGTATTCAC
ACATCTCCCTTAAATCGTTTCAAATATATGTGGAAACTTCTAAGACAAGACCAACAATCCATTATACTTG
TAAATGATTCAGCAATCCTAGAAGTACGCAAGGAAAGTCACCCCTTGGCTTTCGAGTGTGACACACTGGA
TAATAATGAAATAGTAGCAACTATTAAATTCACAGTCTATACGAGCAGTGAATTGCAGATGAGAAGATCA
AGCCTACCAGCCACTGATGCAGCCCTAATTTTTGTGCTGACCATAGGAGTCATTATCTGTGTATTTATAA
TTTTCTTATTGATCTTCATAATCATAAATTGGGCAGCAGTCAAGGCTTTCTGGGGGGCAAAAGCCTCTAC
ACCTGAGGTACAATCCGAGCAGAGTTCTGTGAGATACAAAGATTCAACTTCTCTTGACCAATTACCAACA
GAAATGCCTGGTGAAGATGATGCTTTAAGTGAATGGAATGAATGA

Translation (294 aa):
MSPRGTGCSAGLLMTVGWLLLAGLQSARGTNVTAAVQDAGLAHEGEGEEETENNDSETAENYAPPETEDV
SNRNVVKEVEFGMCTVTCGIGVREVILTNGCPGGESKCVVRVEECRGPTDCGWGKPISESLESVRLACIH
TSPLNRFKYMWKLLRQDQQSIILVNDSAILEVRKESHPLAFECDTLDNNEIVATIKFTVYTSSELQMRRS
SLPATDAALIFVLTIGVIICVFIIFLLIFIIINWAAVKAFWGAKASTPEVQSEQSSVRYKDSTSLDQLPT
EMPGEDDALSEWNE


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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