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Report for CCDS501.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
501.1 Public Homo sapiens 1 ARTN 24 110 108 CCDS HistoryNCBI Gene:9048Re-query CCDS DB by CCDS ID:501.1Re-query CCDS DB by GeneID:9048See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 501.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000372354.3 ENSP00000361429.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000372354.3Link to Ensembl Protein Viewer:ENSP00000361429.3Re-query CCDS DB by Nucleotide ID:ENST00000372354Re-query CCDS DB by Protein ID:ENSP00000361429
Original member Current member EBI ENST00000372359.10 ENSP00000361434.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000372359.10Link to Ensembl Protein Viewer:ENSP00000361434.5Re-query CCDS DB by Nucleotide ID:ENST00000372359Re-query CCDS DB by Protein ID:ENSP00000361434
Original member Current member NCBI NM_057091.3 NP_476432.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_057091.3Link to Protein Sequence:NP_476432.2Re-query CCDS DB by Nucleotide ID:NM_057091Re-query CCDS DB by Protein ID:NP_476432Link to BLAST:NP_476432.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_476432.2 220 Q5T4W7-1 220 100% 0 0

Chromosomal Locations for CCDS 501.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 43935657 43935716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 43936093 43936231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 43936302 43936765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (663 nt):
ATGGAACTTGGACTTGGAGGCCTCTCCACGCTGTCCCACTGCCCCTGGCCTAGGCAGCAGCCTGCCCTGT
GGCCCACCCTGGCCGCTCTGGCTCTGCTGAGCAGCGTCGCAGAGGCCTCCCTGGGCTCCGCGCCCCGCAG
CCCTGCCCCCCGCGAAGGCCCCCCGCCTGTCCTGGCGTCCCCCGCCGGCCACCTGCCGGGGGGACGCACG
GCCCGCTGGTGCAGTGGAAGAGCCCGGCGGCCGCCGCCGCAGCCTTCTCGGCCCGCGCCCCCGCCGCCTG
CACCCCCATCTGCTCTTCCCCGCGGGGGCCGCGCGGCGCGGGCTGGGGGCCCGGGCAGCCGCGCTCGGGC
AGCGGGGGCGCGGGGCTGCCGCCTGCGCTCGCAGCTGGTGCCGGTGCGCGCGCTCGGCCTGGGCCACCGC
TCCGACGAGCTGGTGCGTTTCCGCTTCTGCAGCGGCTCCTGCCGCCGCGCGCGCTCTCCACACGACCTCA
GCCTGGCCAGCCTACTGGGCGCCGGGGCCCTGCGACCGCCCCCGGGCTCCCGGCCCGTCAGCCAGCCCTG
CTGCCGACCCACGCGCTACGAAGCGGTCTCCTTCATGGACGTCAACAGCACCTGGAGAACCGTGGACCGC
CTCTCCGCCACCGCCTGCGGCTGCCTGGGCTGA

Translation (220 aa):
MELGLGGLSTLSHCPWPRQQPALWPTLAALALLSSVAEASLGSAPRSPAPREGPPPVLASPAGHLPGGRT
ARWCSGRARRPPPQPSRPAPPPPAPPSALPRGGRAARAGGPGSRARAAGARGCRLRSQLVPVRALGLGHR
SDELVRFRFCSGSCRRARSPHDLSLASLLGAGALRPPPGSRPVSQPCCRPTRYEAVSFMDVNSTWRTVDR
LSATACGCLG


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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