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Report for CCDS4827.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4827.1 Public Homo sapiens 6 C6orf89 24 110 108 CCDS HistoryNCBI Gene:221477Re-query CCDS DB by CCDS ID:4827.1Re-query CCDS DB by GeneID:221477See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4827.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000355190.7 ENSP00000347322.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000355190.7Link to Ensembl Protein Viewer:ENSP00000347322.3Re-query CCDS DB by Nucleotide ID:ENST00000355190Re-query CCDS DB by Protein ID:ENSP00000347322
Original member Current member NCBI NM_152734.4 NP_689947.2 Accepted alive Link to Nucleotide Sequence:NM_152734.4Link to Protein Sequence:NP_689947.2Re-query CCDS DB by Nucleotide ID:NM_152734Re-query CCDS DB by Protein ID:NP_689947Link to BLAST:NP_689947.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_689947.2 354 Q6UWU4-2 354 100% 0 0

Chromosomal Locations for CCDS 4827.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 36886027 36886028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36899426 36899633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36902221 36902434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36914284 36914435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36914554 36914693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36916445 36916574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36919578 36919701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36923347 36923441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1065 nt):
ATGGATTTTATATTGGAAGACATGGATCTTGCTGCCAACGAGATCAGCATTTATGACAAACTTTCAGAGA
CTGTTGATTTGGTGAGACAGACCGGCCATCAGTGTGGCATGTCAGAGAAGGCAATTGAAAAATTTATCAG
ACAGCTGCTGGAAAAGAATGAACCTCAGAGACCCCCCCCGCAGTATCCTCTCCTTATAGTTGTGTATAAG
GTTCTCGCAACCTTGGGATTAATCTTGCTCACTGCCTACTTTGTGATTCAACCTTTCAGCCCATTAGCAC
CTGAGCCAGTGCTTTCTGGAGCTCACACCTGGCGCTCACTCATCCATCACATTAGGCTGATGTCCTTGCC
CATTGCCAAGAAGTACATGTCAGAAAATAAGGGAGTTCCTCTGCATGGGGGTGATGAAGACAGACCCTTT
CCAGACTTTGACCCCTGGTGGACAAACGACTGTGAGCAGAATGAGTCAGAGCCCATTCCTGCCAACTGCA
CTGGCTGTGCCCAGAAACACCTGAAGGTGATGCTCCTGGAAGACGCCCCAAGGAAATTTGAGAGGCTCCA
TCCACTGGTGATCAAGACGGGAAAGCCCCTGTTGGAGGAAGAGATTCAGCATTTTTTGTGCCAGTACCCT
GAGGCGACAGAAGGCTTCTCTGAAGGGTTTTTCGCCAAGTGGTGGCGCTGCTTTCCTGAGCGGTGGTTCC
CATTTCCTTATCCATGGAGGAGACCTCTGAACAGATCACAAATGTTACGTGAGCTTTTTCCTGTTTTCAC
TCACCTGCCATTTCCAAAAGATGCCTCTTTAAACAAGTGCTCCTTTCTTCACCCAGAACCTGTTGTGGGG
AGTAAGATGCATAAGATGCCTGACCTATTTATCATTGGCAGCGGTGAGGCCATGTTGCAGCTCATCCCTC
CCTTCCAGTGCCGAAGACATTGTCAGTCTGTGGCCATGCCAATAGAGCCAGGGGATATCGGCTATGTCGA
CACCACCCACTGGAAGGTCTACGTTATAGCCAGAGGGGTCCAGCCTTTGGTCATCTGCGATGGAACCGCT
TTCTCAGAACTGTAG

Translation (354 aa):
MDFILEDMDLAANEISIYDKLSETVDLVRQTGHQCGMSEKAIEKFIRQLLEKNEPQRPPPQYPLLIVVYK
VLATLGLILLTAYFVIQPFSPLAPEPVLSGAHTWRSLIHHIRLMSLPIAKKYMSENKGVPLHGGDEDRPF
PDFDPWWTNDCEQNESEPIPANCTGCAQKHLKVMLLEDAPRKFERLHPLVIKTGKPLLEEEIQHFLCQYP
EATEGFSEGFFAKWWRCFPERWFPFPYPWRRPLNRSQMLRELFPVFTHLPFPKDASLNKCSFLHPEPVVG
SKMHKMPDLFIIGSGEAMLQLIPPFQCRRHCQSVAMPIEPGDIGYVDTTHWKVYVIARGVQPLVICDGTA
FSEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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