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Report for CCDS48050.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48050.1 Public Homo sapiens 9 GTF3C5 24 110 108 CCDS HistoryNCBI Gene:9328Re-query CCDS DB by CCDS ID:48050.1Re-query CCDS DB by GeneID:9328See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48050.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000372108.9 ENSP00000361180.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000372108.9Link to Ensembl Protein Viewer:ENSP00000361180.5Re-query CCDS DB by Nucleotide ID:ENST00000372108Re-query CCDS DB by Protein ID:ENSP00000361180
Original member Current member NCBI NM_001122823.2 NP_001116295.1 Accepted alive Link to Nucleotide Sequence:NM_001122823.2Link to Protein Sequence:NP_001116295.1Re-query CCDS DB by Nucleotide ID:NM_001122823Re-query CCDS DB by Protein ID:NP_001116295Link to BLAST:NP_001116295.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001116295.1 526 Q9Y5Q8-3 526 100% 0 0

Chromosomal Locations for CCDS 48050.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 133031012 133031164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 133042087 133042306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 133043728 133043926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 133050783 133050978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 133052060 133052164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 133053828 133053942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 133054408 133054488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 133054712 133054809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 133054944 133054964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 133056012 133056094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 133056766 133056908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 133057814 133057980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1581 nt):
ATGGCGGCGGAGGCGGCCGATTTGGGGCTGGGGGCCGCCGTCCCCGTGGAGCTGAGGCGGGAGCGACGCA
TGGTGTGCGTGGAGTACCCGGGAGTGGTGCGTGATGTGGCTAAGATGCTGCCGACTCTGGGCGGCGAGGA
AGGCGTCTCCCGGATCTACGCAGACCCCACCAAGAGGCTGGAGCTGTACTTCCGGCCCAAGGACCCATAC
TGCCACCCAGTGTGCGCCAACCGCTTCAGTACCAGCAGCCTGCTGCTCCGCATCAGGAAGAGAACGAGGC
GGCAGAAAGGGGTGCTGGGCACTGAGGCCCACTCCGAGGTCACATTTGACATGGAGATCCTTGGCATCAT
CTCCACCATTTACAAATTTCAGGGGATGTCTGACTTCCAGTACTTGGCTGTGCATACGGAAGCAGGCGGC
AAGCATACGTCAATGTATGACAAGGTGCTCATGCTCCGGCCCGAGAAGGAGGCCTTTTTCCACCAGGAGC
TGCCGCTCTACATCCCCCCACCCATCTTCTCCCGGCTGGACGCCCCGGTGGACTACTTCTACCGACCAGA
GACCCAGCACCGGGAAGGCTACAACAATCCCCCCATCTCAGGTGAGAATCTGATTGGCCTGAGCAGAGCC
CGGCGCCCCCACAATGCCATCTTTGTCAACTTTGAGGATGAGGAGGTGCCCAAGCAGCCACTGGAGGCTG
CAGCCCAGACGTGGAGGAGAGTCTGCACTAACCCCGTGGACCGGAAGGTGGAGGAGGAGCTGAGGAAGCT
GTTTGACATCCGTCCCATCTGGTCCCGAAATGCTGTCAAGGCCAACATCAGCGTCCACCCAGACAAGCTC
AAGGTCTTGCTTCCCTTCATAGCCTATTACATGATAACAGGCCCCTGGCGCAGCCTATGGATTCGATTTG
GGTATGACCCCCGAAAAAACCCAGATGCCAAGATTTATCAAGTCCTCGATTTCCGAATCCGTTGTGGAAT
GAAACACGGTTACGCCCCCAGTGACTTGCCGGTCAAAGCAAAGCGCAGCACCTACAACTACAGCCTCCCC
ATCACCGTCAAGAAGACATCCAGCCAGCTTGTCACCATGCATGACCTGAAGCAGGGCCTGGGCCCGTCGG
GGACGAGTGGTGCTCGGAAACCAGCTTCCAGCAAGTACAAGCTCAAGGTCAGCCTTCAGACACTGAGGGA
CTCTGTCTACATCTTCCGGGAAGGGGCCTTGCCACCCTATCGGCAGATGTTCTACCAGTTATGCGACTTG
AATGTGGAAGAGTTGCAGAAGATCATTCACCGCAATGACGGGGCAGAGAATTCCTGCACAGAACGGGATG
GGTGGTGCCTCCCCAAGACCAGCGACGAGCTCAGGGACACCATGTCCCTCATGATCCGGCAGACCATCCG
CTCCAAGAGGCCTGCTCTCTTTTCCAGCTCAGCCAAGGCTGATGGCGGAAAAGAGCAGCTGACGTACGAG
TCTGGGGAAGACGAGGAGGATGAGGAGGAGGAGGAAGAGGAGGAGGAGGACTTCAAGCCATCCGACGGCA
GTGAAAACGAAATGGAGACAGAGATTCTGGACTACGTGTGA

Translation (526 aa):
MAAEAADLGLGAAVPVELRRERRMVCVEYPGVVRDVAKMLPTLGGEEGVSRIYADPTKRLELYFRPKDPY
CHPVCANRFSTSSLLLRIRKRTRRQKGVLGTEAHSEVTFDMEILGIISTIYKFQGMSDFQYLAVHTEAGG
KHTSMYDKVLMLRPEKEAFFHQELPLYIPPPIFSRLDAPVDYFYRPETQHREGYNNPPISGENLIGLSRA
RRPHNAIFVNFEDEEVPKQPLEAAAQTWRRVCTNPVDRKVEEELRKLFDIRPIWSRNAVKANISVHPDKL
KVLLPFIAYYMITGPWRSLWIRFGYDPRKNPDAKIYQVLDFRIRCGMKHGYAPSDLPVKAKRSTYNYSLP
ITVKKTSSQLVTMHDLKQGLGPSGTSGARKPASSKYKLKVSLQTLRDSVYIFREGALPPYRQMFYQLCDL
NVEELQKIIHRNDGAENSCTERDGWCLPKTSDELRDTMSLMIRQTIRSKRPALFSSSAKADGGKEQLTYE
SGEDEEDEEEEEEEEEDFKPSDGSENEMETEILDYV


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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