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Report for CCDS47964.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47964.2 Public Homo sapiens 9 RGP1 24 110 108 CCDS HistoryNCBI Gene:9827Re-query CCDS DB by CCDS ID:47964.2Re-query CCDS DB by GeneID:9827See the combined annotation on chromosome 9 in Sequence Viewer

Public Note for CCDS 47964.1
The coding region has been updated to represent an alternative splicing pattern that is more supported by the available transcript and protein data.

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 47964.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000378078.5 ENSP00000367318.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000378078.5Link to Ensembl Protein Viewer:ENSP00000367318.4Re-query CCDS DB by Nucleotide ID:ENST00000378078Re-query CCDS DB by Protein ID:ENSP00000367318
Original member Current member NCBI NM_001080496.3 NP_001073965.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001080496.3Link to Protein Sequence:NP_001073965.2Re-query CCDS DB by Nucleotide ID:NM_001080496Re-query CCDS DB by Protein ID:NP_001073965Link to BLAST:NP_001073965.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001073965.2 391 Q92546 391 100% 0 0

Chromosomal Locations for CCDS 47964.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 35749756 35749871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35750243 35750379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35750658 35750741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35750840 35750989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35751266 35751412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35751627 35751754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35751956 35752145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35752651 35752874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1176 nt):
ATGATTGAAGTGGTAGCAGAGCTCAGCCGGGGTCCTGTATTTTTGGCTGGGGAGGCGCTGGAGTGTGTAG
TGACCGTCACCAACCCCCTTCCGCCCACGGCCACTTCTGCATCCAGTGAGGCCCTGGCCTGGGCCAGTGC
CCAAATCCACTGCCAGTTCCATGCCAGTGAGAGTCGAGTAGCACTGCCTCCTCCTGACTCTAGTCAGCCA
GATGTCCAGCCCGACAGCCAGACTGTCTTTCTGCCACACCGAGGTGAGAGGGGCCAGTGTATCCTTTCTA
CTCCACCGAAAATTCTATTCTGTGACCTGAGGCTTGATCCTGGAGAGTCCAAATCATACTCCTACAGTGA
AGTGCTGCCCATAGAGGGACCACCCTCCTTTCGGGGTCAGTCAGTCAAGTACGTCTACAAACTGACCATT
GGCTGCCAGCGTGTCAACTCCCCTATCACTTTACTCAGAGTCCCTCTGAGGGTTCTTGTGCTGACTGGCC
TTCAGGATGTCCGGTTTCCCCAGGATGAGGCTGTAGCCCCATCCAGTCCATTCTTGGAGGAGGATGAAGG
TGGGAAGAAAGATTCATGGCTAGCTGAGCTGGCTGGGGAACGCCTAATGGCTGCCACATCCTGCCGCAGC
CTCCATCTATACAATATCAGTGATGGCCGAGGGAAAGTTGGGACGTTTGGCATCTTCAAATCTGTGTACA
GACTTGGCGAGGACGTGGTGGGGACCTTAAACTTAGGGGAAGGAACCGTAGCTTGTTTGCAGTTTTCAGT
CAGCTTACAGACCGAGGAGCGTGTACAGCCTGAGTACCAGCGGCGACGTGGGGCAGGGGGTGTCCCCTCT
GTGTCACATGTGACTCACGCCCGGCACCAGGAATCCTGCCTACATACAACTAGAACCAGCTTCTCCCTCC
CAATCCCTCTCAGCTCCACCCCAGGCTTCTGTACAGCCATTGTGTCCTTGAAGTGGAGATTGCATTTTGA
ATTTGTAACGTCCCGAGAACCAGGATTGGTACTCCTACCCCCTGTGGAACAGCCCGAACCTACCACCTGG
ACAGGACCTGAGCAAGTACCTGTAGACACCTTCAGCTGGGACCTGCCCATCAAGGTGCTGCCTACTAGCC
CCACCCTGGCCTCATATGCTGCCCCAGGCCCCAGCACCAGCACCATAACCATCTGA

Translation (391 aa):
MIEVVAELSRGPVFLAGEALECVVTVTNPLPPTATSASSEALAWASAQIHCQFHASESRVALPPPDSSQP
DVQPDSQTVFLPHRGERGQCILSTPPKILFCDLRLDPGESKSYSYSEVLPIEGPPSFRGQSVKYVYKLTI
GCQRVNSPITLLRVPLRVLVLTGLQDVRFPQDEAVAPSSPFLEEDEGGKKDSWLAELAGERLMAATSCRS
LHLYNISDGRGKVGTFGIFKSVYRLGEDVVGTLNLGEGTVACLQFSVSLQTEERVQPEYQRRRGAGGVPS
VSHVTHARHQESCLHTTRTSFSLPIPLSSTPGFCTAIVSLKWRLHFEFVTSREPGLVLLPPVEQPEPTTW
TGPEQVPVDTFSWDLPIKVLPTSPTLASYAAPGPSTSTITI


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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