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Report for CCDS47430.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47430.1 Public Homo sapiens 6 XPO5 24 110 108 CCDS HistoryNCBI Gene:57510Re-query CCDS DB by CCDS ID:47430.1Re-query CCDS DB by GeneID:57510See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47430.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000265351.12 ENSP00000265351.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000265351.12Link to Ensembl Protein Viewer:ENSP00000265351.7Re-query CCDS DB by Nucleotide ID:ENST00000265351Re-query CCDS DB by Protein ID:ENSP00000265351
Original member Current member NCBI NM_020750.3 NP_065801.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020750.3Link to Protein Sequence:NP_065801.1Re-query CCDS DB by Nucleotide ID:NM_020750Re-query CCDS DB by Protein ID:NP_065801Link to BLAST:NP_065801.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065801.1 1204 Q9HAV4 1204 100% 0 0

Chromosomal Locations for CCDS 47430.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 43523868 43524005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43524471 43524635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43524831 43524968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43525107 43525214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43525839 43525921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43526685 43526747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43527634 43527731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43528159 43528205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43528828 43528925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43530688 43530824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43531479 43531575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43533907 43534007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43546571 43546752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43547608 43547707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43548261 43548460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43549489 43549578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43549893 43549934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43551298 43551453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43553373 43553503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43555836 43555964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43558501 43558591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43560178 43560303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43560924 43561007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43562247 43562346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43565660 43565736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43567169 43567354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43568711 43568737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43570502 43570684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43570857 43570994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43572506 43572578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43573480 43573601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43575760 43575864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3615 nt):
ATGGCGATGGATCAAGTAAACGCGCTGTGCGAGCAGCTGGTGAAAGCGGTGACGGTCATGATGGACCCCA
ACTCCACCCAGCGCTACCGGCTGGAAGCCCTCAAGTTTTGTGAGGAGTTTAAAGAAAAGTGTCCTATCTG
TGTCCCCTGTGGCTTGAGGTTGGCTGAGAAAACACAAGTTGCCATCGTCAGACATTTTGGCCTTCAGATC
CTGGAACACGTTGTCAAGTTTCGGTGGAACGGCATGTCTCGATTGGAGAAGGTGTATCTGAAGAACAGTG
TCATGGAGCTGATTGCAAATGGAACATTGAACATTTTGGAAGAGGAGAACCATATTAAAGATGCTCTGTC
TCGAATTGTAGTGGAAATGATCAAGCGAGAGTGGCCACAGCATTGGCCTGACATGCTAATAGAATTGGAC
ACTCTTTCCAAACAAGGGGAAACACAGACAGAATTGGTGATGTTTATCCTTTTGCGACTGGCAGAGGATG
TAGTGACTTTTCAGACACTTCCCCCTCAAAGAAGAAGGGACATCCAGCAAACATTAACCCAGAACATGGA
AAGGATCTTCAGTTTTCTGCTTAACACACTTCAAGAAAATGTAAACAAGTATCAGCAAGTGAAGACAGAT
ACTTCTCAGGAGTCAAAGGCGCAAGCAAACTGTCGAGTAGGAGTTGCAGCACTGAATACTCTAGCAGGCT
ATATTGACTGGGTGTCTATGAGTCACATCACTGCTGAAAACTGTAAACTCCTGGAGATACTGTGTTTGCT
GTTGAATGAACAGGAACTTCAGTTGGGAGCCGCTGAGTGTCTTCTCATTGCAGTCAGCAGAAAAGGCAAG
TTGGAAGACCGGAAGCCCTTGATGGTCTTATTTGGAGATGTTGCCATGCATTATATACTCTCCGCCGCAC
AGACTGCTGATGGAGGAGGTTTGGTAGAAAAACACTACGTCTTTCTGAAGAGGCTCTGTCAGGTGTTGTG
TGCGCTGGGCAATCAGCTGTGTGCATTGCTGGGTGCAGATTCTGATGTAGAAACACCATCAAACTTTGGA
AAATACCTGGAATCTTTTCTTGCTTTCACAACCCATCCAAGTCAGTTTCTACGCTCTTCAACTCAGATGA
CTTGGGGAGCCCTCTTCAGGCATGAAATCCTGTCCCGTGATCCTTTGCTATTAGCAATAATACCAAAATA
TCTTCGTGCTTCCATGACTAACTTGGTCAAGATGGGCTTTCCTTCTAAAACAGACAGCCCTAGCTGTGAA
TATTCTCGGTTTGATTTTGATAGCGATGAGGACTTCAATGCTTTCTTCAACTCCTCCCGAGCACAACAAG
GAGAGGTGATGAGGTTGGCATGTCGTTTGGATCCCAAAACTAGCTTCCAGATGGCTGGGGAGTGGCTAAA
GTATCAACTATCAACTTTTCTTGATGCTGGTTCTGTGAATTCTTGTTCTGCAGTTGGAACTGGAGAAGGA
AGCCTCTGTTCCGTCTTCTCACCTTCATTCGTGCAGTGGGAAGCCATGACTCTTTTTTTGGAAAGTGTTA
TCACCCAGATGTTTCGAACACTAAATAGAGAAGAAATTCCTGTTAATGATGGAATAGAGCTATTGCAGAT
GGTTCTGAACTTTGATACCAAGGATCCCCTCATCCTGTCCTGCGTCCTTACTAATGTCTCTGCACTCTTT
CCATTTGTCACCTACAGACCAGAGTTCCTGCCCCAGGTCTTCTCTAAGCTATTTTCATCTGTCACTTTTG
AAACTGTTGAAGAAAGTAAGGCCCCCAGAACCCGGGCAGTGAGGAATGTGAGGAGGCATGCTTGTTCCTC
CATCATCAAGATGTGTCGTGACTACCCCCAGCTTGTGCTGCCCAATTTTGACATGCTTTATAACCATGTG
AAGCAACTCCTCTCCAATGAGCTACTCCTGACACAAATGGAGAAGTGTGCCCTCATGGAAGCCCTGGTTC
TCATTAGCAACCAATTTAAGAACTACGAGCGTCAGAAGGTGTTCCTAGAGGAGCTGATGGCACCAGTGGC
CAGCATCTGGCTTTCTCAAGACATGCACAGAGTGCTGTCAGATGTTGATGCTTTCATTGCGTATGTGGGT
ACAGATCAGAAGAGCTGTGACCCAGGCCTGGAGGATCCGTGTGGCTTAAACCGTGCACGAATGAGCTTTT
GTGTATACAGCATTCTGGGTGTGGTGAAACGAACTTGCTGGCCCACTGACCTAGAAGAGGCCAAAGCTGG
GGGATTTGTGGTGGGTTATACATCCAGTGGAAATCCAATCTTCCGTAACCCCTGCACAGAGCAGATTCTG
AAACTTCTTGACAATTTGCTTGCGCTTATAAGAACCCACAATACATTATATGCACCAGAAATGCTAGCCA
AAATGGCAGAGCCTTTCACCAAGGCTCTGGATATGCTTGACGCGGAAAAATCTGCTATATTAGGATTACC
TCAACCTCTCTTGGAACTCAATGACTCTCCTGTCTTCAAAACCGTCTTGGAAAGAATGCAGCGTTTCTTC
TCTACCCTCTATGAAAACTGTTTTCATATCCTAGGGAAGGCAGGCCCTTCCATGCAGCAAGACTTCTATA
CTGTGGAGGACCTTGCTACCCAGCTTCTCAGCTCAGCCTTTGTCAACTTGAACAATATTCCTGACTACCG
ACTCAGACCCATGCTTCGTGTCTTTGTAAAGCCTCTGGTGCTCTTCTGTCCCCCAGAGCACTATGAAGCC
CTGGTATCCCCCATCCTCGGACCTCTTTTCACCTACCTCCATATGAGGCTTTCTCAGAAATGGCAAGTTA
TCAACCAAAGGAGCCTGCTGTGTGGAGAAGATGAGGCTGCAGATGAAAACCCAGAGTCTCAAGAGATGCT
GGAGGAGCAACTGGTGAGGATGTTAACCCGAGAAGTCATGGACCTAATCACGGTTTGCTGTGTTTCAAAG
AAGGGTGCTGACCACAGTAGTGCTCCCCCAGCAGATGGAGACGATGAAGAAATGATGGCCACAGAGGTCA
CCCCCTCAGCTATGGCAGAGCTTACAGACCTGGGCAAATGTCTGATGAAGCATGAGGATGTTTGTACAGC
GCTATTAATTACAGCCTTCAATTCCCTGGCCTGGAAAGATACTCTGTCCTGCCAGAGGACAACCTCACAG
CTCTGCTGGCCTCTCCTCAAACAAGTGCTGTCAGGGACACTGCTCGCAGATGCAGTTACGTGGCTTTTCA
CCAGTGTGCTGAAAGGCTTACAGATGCACGGGCAGCACGACGGGTGCATGGCTTCCCTGGTCCATCTGGC
CTTCCAGATATACGAGGCACTGCGCCCCAGGTACCTGGAGATAAGAGCTGTAATGGAGCAAATCCCTGAA
ATACAGAAGGACTCACTGGACCAGTTTGACTGCAAGCTTTTAAACCCCTCCCTGCAGAAAGTGGCTGACA
AGCGCCGAAAGGACCAATTCAAACGCCTCATTGCTGGTTGCATTGGGAAACCCTTGGGAGAGCAGTTCCG
AAAAGAAGTTCACATTAAGAATCTTCCCTCACTTTTCAAAAAAACAAAGCCAATGCTGGAGACGGAGGTG
CTGGACAATGATGGGGGTGGCCTGGCCACCATCTTTGAACCCTGA

Translation (1204 aa):
MAMDQVNALCEQLVKAVTVMMDPNSTQRYRLEALKFCEEFKEKCPICVPCGLRLAEKTQVAIVRHFGLQI
LEHVVKFRWNGMSRLEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHWPDMLIELD
TLSKQGETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTD
TSQESKAQANCRVGVAALNTLAGYIDWVSMSHITAENCKLLEILCLLLNEQELQLGAAECLLIAVSRKGK
LEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGNQLCALLGADSDVETPSNFG
KYLESFLAFTTHPSQFLRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRASMTNLVKMGFPSKTDSPSCE
YSRFDFDSDEDFNAFFNSSRAQQGEVMRLACRLDPKTSFQMAGEWLKYQLSTFLDAGSVNSCSAVGTGEG
SLCSVFSPSFVQWEAMTLFLESVITQMFRTLNREEIPVNDGIELLQMVLNFDTKDPLILSCVLTNVSALF
PFVTYRPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQLVLPNFDMLYNHV
KQLLSNELLLTQMEKCALMEALVLISNQFKNYERQKVFLEELMAPVASIWLSQDMHRVLSDVDAFIAYVG
TDQKSCDPGLEDPCGLNRARMSFCVYSILGVVKRTCWPTDLEEAKAGGFVVGYTSSGNPIFRNPCTEQIL
KLLDNLLALIRTHNTLYAPEMLAKMAEPFTKALDMLDAEKSAILGLPQPLLELNDSPVFKTVLERMQRFF
STLYENCFHILGKAGPSMQQDFYTVEDLATQLLSSAFVNLNNIPDYRLRPMLRVFVKPLVLFCPPEHYEA
LVSPILGPLFTYLHMRLSQKWQVINQRSLLCGEDEAADENPESQEMLEEQLVRMLTREVMDLITVCCVSK
KGADHSSAPPADGDDEEMMATEVTPSAMAELTDLGKCLMKHEDVCTALLITAFNSLAWKDTLSCQRTTSQ
LCWPLLKQVLSGTLLADAVTWLFTSVLKGLQMHGQHDGCMASLVHLAFQIYEALRPRYLEIRAVMEQIPE
IQKDSLDQFDCKLLNPSLQKVADKRRKDQFKRLIAGCIGKPLGEQFRKEVHIKNLPSLFKKTKPMLETEV
LDNDGGGLATIFEP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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