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Report for CCDS47395.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47395.2 Public Homo sapiens 6 MOG 24 110 108 CCDS HistoryNCBI Gene:4340Re-query CCDS DB by CCDS ID:47395.2Re-query CCDS DB by GeneID:4340See the combined annotation on chromosome 6 in Sequence Viewer

Public Note for CCDS 47395.1
The coding region has been updated to represent an alternative splicing pattern that is more likely to be protein-coding. The previous representation was a candidate for nonsense-mediated mRNA decay (NMD).

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 47395.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000376888.6 ENSP00000366085.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000376888.6Link to Ensembl Protein Viewer:ENSP00000366085.2Re-query CCDS DB by Nucleotide ID:ENST00000376888Re-query CCDS DB by Protein ID:ENSP00000366085
Original member Current member NCBI NM_206814.6 NP_996537.3 Accepted alive Link to Nucleotide Sequence:NM_206814.6Link to Protein Sequence:NP_996537.3Re-query CCDS DB by Nucleotide ID:NM_206814Re-query CCDS DB by Protein ID:NP_996537Link to BLAST:NP_996537.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_996537.3 131 Q16653-4 131 100% 0 0

Chromosomal Locations for CCDS 47395.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 29657210 29657297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29666152 29666265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29667643 29667663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29667904 29667924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29670281 29670397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29670701 29670721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29671172 29671185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (396 nt):
ATGGCAAGCTTATCAAGACCCTCTCTGCCCAGCTGCCTCTGCTCCTTCCTCCTCCTCCTCCTCCTCCAAG
TGTCTTCCAGCTATGCAGATCCTTTCTACTGGGTGAGCCCTGGAGTGCTGGTTCTCCTCGCGGTGCTGCC
TGTGCTCCTCCTGCAGATCACTGTTGGCCTCATCTTCCTCTGCCTGCAGTACAGACTGAGAGGAAAACTT
CGAGCAGAGATAGAGAATCTCCACCGGACTTTTGATCCCCACTTTCTGAGGGTGCCCTGCTGGAAGATAA
CCCTGTTTGTAATTGTGCCGGTTCTTGGACCCTTGGTTGCCTTGATCATCTGCTACAACTGGCTACATCG
AAGACTAGCAGGGCAATTCCTTGAAGAGCTACGAAATCCCTTCTGA

Translation (131 aa):
MASLSRPSLPSCLCSFLLLLLLQVSSSYADPFYWVSPGVLVLLAVLPVLLLQITVGLIFLCLQYRLRGKL
RAEIENLHRTFDPHFLRVPCWKITLFVIVPVLGPLVALIICYNWLHRRLAGQFLEELRNPF


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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