NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS47138.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47138.1 Public Homo sapiens 4 GYPE 24 110 108 CCDS HistoryNCBI Gene:2996Re-query CCDS DB by CCDS ID:47138.1Re-query CCDS DB by GeneID:2996See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47138.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000358615.9 ENSP00000351430.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000358615.9Link to Ensembl Protein Viewer:ENSP00000351430.4Re-query CCDS DB by Nucleotide ID:ENST00000358615Re-query CCDS DB by Protein ID:ENSP00000351430
Original member Current member EBI ENST00000437468.2 ENSP00000400698.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000437468.2Link to Ensembl Protein Viewer:ENSP00000400698.2Re-query CCDS DB by Nucleotide ID:ENST00000437468Re-query CCDS DB by Protein ID:ENSP00000400698
Original member Current member NCBI NM_002102.4 NP_002093.2 Accepted alive Link to Nucleotide Sequence:NM_002102.4Link to Protein Sequence:NP_002093.2Re-query CCDS DB by Nucleotide ID:NM_002102Re-query CCDS DB by Protein ID:NP_002093Link to BLAST:NP_002093.2
Original member Current member NCBI NM_198682.3 NP_941391.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_198682.3Link to Protein Sequence:NP_941391.2Re-query CCDS DB by Nucleotide ID:NM_198682Re-query CCDS DB by Protein ID:NP_941391Link to BLAST:NP_941391.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_002093.2 78 P15421 78 100% 0 0
NP_941391.2 78 P15421 78 100% 0 0

Chromosomal Locations for CCDS 47138.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 143876755 143876855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 143880411 143880509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 143905471 143905507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (237 nt):
ATGTATGGAAAAATAATCTTTGTATTACTATTGTCAGGAATTGTGAGCATATCAGCATCAAGTACCACTG
GT
GTGGCAATGCACACTTCAACCTCTTCTTCAGTCACAAAGAGTTACATCTCATCACAGACAAATGGGAT
A
ACACTCATTAATTGGTGGGCGATGGCTCGTGTTATTTTTGAGGTGATGCTTGTTGTTGTTGGAATGATC
ATC
TTAATTTCTTACTGTATTCGATGA


Translation (78 aa):
MYGKIIFVLLLSGIVSISASSTTGVAMHTSTSSSVTKSYISSQTNGITLINWWAMARVIFEVMLVVVGMI
I
LISYCIR




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser