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Report for CCDS46662.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46662.2 Public Homo sapiens 22 CLTCL1 24 110 108 CCDS HistoryNCBI Gene:8218Re-query CCDS DB by CCDS ID:46662.2Re-query CCDS DB by GeneID:8218See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 46662.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000427926.6 ENSP00000441158.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000427926.6Link to Ensembl Protein Viewer:ENSP00000441158.1Re-query CCDS DB by Nucleotide ID:ENST00000427926Re-query CCDS DB by Protein ID:ENSP00000441158
Original member Current member NCBI NM_007098.4 NP_009029.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_007098.4Link to Protein Sequence:NP_009029.3Re-query CCDS DB by Nucleotide ID:NM_007098Re-query CCDS DB by Protein ID:NP_009029Link to BLAST:NP_009029.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_009029.3 1640 P53675-1 1640 100% 0 0

Chromosomal Locations for CCDS 46662.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 19180219 19180238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 19180731 19180806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 19183390 19183611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 19187558 19187728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 19187981 19188091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 19191304 19191435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 19196266 19196415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 19196489 19196656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 19199734 19199841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 19201329 19201493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 19208154 19208311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 19208922 19209114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 19210326 19210509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 19216111 19216256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 19219885 19220007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 19221377 19221611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 19221951 19222093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 19222684 19222809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 19223891 19224054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 19225453 19225633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 19226219 19226383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 19229838 19229975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 19232476 19232598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 19233166 19233318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 19233422 19233622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 19234509 19234706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 19235696 19235869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 19239275 19239388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 19242775 19242936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 19253959 19254227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 19275623 19275830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 19291600 19291641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4923 nt):
ATGGCGCAGATCCTCCCTGTTCGCTTTCAGGAGCACTTCCAGCTCCAAAACCTTGGAATTAATCCAGCTA
ACATTGGATTCAGCACACTGACCATGGAATCTGACAAGTTCATATGTATCCGAGAGAAAGTTGGTGAGCA
GGCACAGGTCACGATCATTGACATGAGTGACCCAATGGCTCCGATCCGACGGCCTATCTCTGCAGAGAGT
GCCATCATGAATCCAGCCTCTAAGGTGATAGCTCTGAAAGCTGGGAAGACACTTCAGATCTTTAATATTG
AGATGAAGAGTAAAATGAAGGCTCATACTATGGCAGAAGAAGTGATTTTCTGGAAATGGGTTTCTGTGAA
CACTGTTGCCTTGGTGACCGAGACCGCGGTCTACCACTGGAGCATGGAAGGTGACTCCCAGCCCATGAAG
ATGTTTGATAGACATACCAGTCTGGTGGGCTGCCAGGTGATTCACTACCGGACTGATGAGTACCAGAAGT
GGCTGCTGCTCGTAGGCATCTCGGCTCAGCAAAACCGTGTGGTTGGAGCAATGCAGCTCTACTCTGTGGA
TAGGAAGGTTTCACAACCCATAGAAGGCCATGCTGCGGCTTTTGCAGAGTTCAAGATGGAGGGGAATGCC
AAGCCTGCCACCCTTTTCTGCTTTGCTGTACGTAATCCCACAGGAGGCAAGTTGCACATCATTGAAGTTG
GACAGCCTGCAGCGGGAAACCAACCTTTTGTAAAGAAAGCAGTAGATGTGTTTTTTCCTCCAGAGGCACA
GAATGATTTTCCAGTGGCTATGCAGATTGGAGCTAAACATGGTGTTATTTACTTGATCACAAAGTATGGC
TATCTTCATCTGTACGACCTAGAGTCTGGCGTGTGCATCTGCATGAACCGTATTAGTGCTGACACAATAT
TTGTCACTGCTCCACACAAACCAACCTCTGGAATTATTGGTGTCAACAAAAAGGGACAGGTACTGTCAGT
TTGTGTTGAGGAAGATAACATTGTGAATTATGCAACCAACGTGCTTCAGAATCCAGACCTTGGTCTGCGT
TTGGCCGTTCGTAGTAACCTGGCTGGGGCAGAGAAGTTGTTTGTGAGAAAATTCAATACCCTCTTTGCAC
AGGGCAGCTATGCTGAAGCCGCCAAAGTTGCAGCGTCTGCACCAAAGGGAATCCTGCGTACCAGAGAGAC
GGTCCAGAAATTCCAGAGTATACCCGCTCAGTCTGGCCAGGCTTCTCCATTGCTGCAGTACTTCGGAATC
CTGCTCGACCAGGGTCAGCTCAATAAACTTGAATCCTTAGAACTTTGCCATCTGGTTCTTCAGCAGGGGC
GTAAGCAACTCCTAGAGAAGTGGCTGAAAGAAGATAAGCTGGAGTGCTCAGAGGAGCTCGGAGACTTGGT
CAAAACCACTGACCCCATGCTCGCTCTGAGTGTGTACCTTCGGGCAAATGTGCCAAGCAAAGTGATCCAG
TGTTTTGCAGAAACAGGCCAATTCCAGAAAATTGTGCTCTATGCCAAAAAGGTTGGGTACACCCCAGACT
GGATCTTTCTGCTGAGGGGTGTAATGAAGATCAGTCCGGAACAGGGCCTGCAGTTTTCTCGAATGCTAGT
GCAGGACGAGGAGCCGCTGGCCAACATTAGCCAGATTGTGGACATTTTCATGGAAAACAGTTTAATTCAG
CAGTGTACTTCCTTCTTATTGGATGCCTTGAAGAATAATCGCCCAGCTGAGGGACTCCTGCAGACATGGC
TGTTGGAGATGAACCTTGTTCATGCACCCCAGGTTGCAGATGCCATCCTTGGAAATAAAATGTTTACTCA
TTACGACCGGGCCCACATTGCCCAGCTCTGTGAGAAGGCAGGCCTCCTGCAGCAAGCACTGGAGCACTAC
ACCGACCTCTATGACATCAAGAGGGCTGTGGTCCACACTCACCTCCTCAATCCCGAGTGGCTTGTCAATT
TCTTTGGCTCCTTATCGGTGGAGGATTCTGTGGAGTGTCTGCATGCCATGCTGTCTGCTAACATCAGACA
GAACCTTCAGCTGTGTGTGCAGGTGGCCTCTAAGTACCACGAGCAGCTGGGCACGCAGGCCCTGGTGGAG
CTCTTTGAATCCTTCAAGAGTTACAAAGGCCTCTTCTACTTCCTGGGCTCAATCGTGAACTTCAGCCAAG
ACCCAGATGTGCATCTGAAATACATTCAGGCTGCCTGTAAGACAGGGCAGATCAAGGAGGTGGAGAGGAT
ATGCCGAGAGAGCAGCTGCTACAACCCAGAGCGTGTGAAGAACTTCCTGAAGGAGGCCAAGCTCACAGAC
CAGCTTCCCCTCATCATCGTGTGTGATCGTTTTGGCTTTGTCCATGACCTTGTCCTATATTTATACCGCA
ACAACCTGCAGAGGTACATTGAGATCTACGTGCAGAAGGTCAACCCTAGCCGGACCCCAGCTGTGATTGG
AGGGCTGCTTGATGTGGATTGTTCTGAGGAAGTGATTAAACACTTAATCATGGCAGTGAGAGGACAGTTC
TCTACTGATGAGTTGGTGGCTGAAGTAGAAAAAAGAAATAGGCTCAAGCTGCTGCTTCCCTGGCTGGAGT
CCCAGATTCAGGAAGGCTGTGAGGAGCCTGCCACTCACAATGCACTGGCTAAAATCTACATCGACAGCAA
CAACAGCCCCGAGTGCTTCCTGAGAGAGAATGCCTACTATGACAGCAGCGTGGTGGGCCGCTACTGTGAG
AAGCGAGACCCCCATCTGGCCTGTGTTGCCTATGAGCGGGGGCAGTGTGACCTTGAGCTCATCAAGGTGT
GCAATGAGAATTCTCTGTTCAAAAGCGAGGCCCGCTACCTGGTATGCAGAAAGGATCCGGAGCTCTGGGC
TCACGTCCTTGAGGAGACCAACCCATCCAGGAGACAGCTAATTGACCAGGTGGTACAGACAGCATTGTCA
GAAACACGGGATCCTGAAGAGATTTCGGTCACTGTCAAAGCCTTTATGACAGCCGACCTGCCTAATGAAC
TGATTGAACTGCTGGAGAAGATAGTTCTGGATAACTCTGTCTTCAGCGAGCACAGGAATCTACAGAATCT
GTTGATCCTGACTGCCATCAAGGCAGACCGCACACGGGTCATGGAGTACATCAGCCGCCTGGACAACTAT
GACGCACTGGACATCGCGAGCATCGCTGTCAGCAGCGCACTGTATGAGGAGGCCTTCACCGTTTTCCACA
AGTTTGATATGAATGCCTCAGCAATCCAGGTCCTGATCGAGCACATTGGAAACCTGGACCGGGCATATGA
GTTTGCGGAGAGATGCAATGAGCCTGCTGTGTGGAGTCAGCTGGCCCAAGCCCAGCTCCAGAAAGATTTG
GTGAAGGAAGCCATCAACTCCTATATCAGAGGGGACGACCCTTCCTCTTACCTGGAAGTTGTTCAGTCAG
CCAGCAGGAGCAACAACTGGGAGGATCTAGTTAAATTTCTGCAGATGGCCAGGAAAAAGGGCCGTGAGTC
CTATATAGAGACTGAACTTATTTTTGCCTTGGCTAAAACCAGCCGTGTTTCTGAGCTAGAAGATTTTATT
AATGGACCCAACAATGCCCACATCCAGCAGGTTGGAGACCGCTGTTACGAGGAGGGAATGTACGAGGCTG
CCAAGCTGCTCTATAGCAATGTTTCTAACTTTGCCCGCCTGGCTTCCACCTTGGTTCACCTCGGTGAGTA
TCAGGCAGCAGTGGACAACAGCCGCAAGGCCAGCAGCACCCGGACGTGGAAGGAGGTGTGCTTTGCCTGC
ATGGATGGACAAGAGTTCCGCTTCGCACAGCTGTGTGGTCTTCACATCGTCATTCATGCAGATGAGCTGG
AGGAGCTGATGTGCTATTACCAGGATCGTGGCTACTTTGAGGAGCTGATCTTGCTGTTGGAAGCGGCCCT
GGGCCTGGAGCGGGCCCACATGGGCATGTTCACTGAGCTGGCCATCCTCTACTCCAAATTCAAGCCACAG
AAGATGCTGGAGCATCTGGAGCTTTTCTGGTCCCGTGTCAACATCCCAAAGGTGCTGAGGGCTGCAGAGC
AGGCACACCTGTGGGCTGAGCTGGTGTTCCTCTATGACAAGTACGAGGAGTATGACAATGCTGTGCTCAC
CATGATGAGCCACCCCACTGAGGCCTGGAAGGAGGGTCAGTTCAAGGACATCATTACCAAGGTTGCCAAC
GTCGAGCTCTGTTACAGAGCCCTGCAGTTCTATTTGGATTACAAACCACTGCTCATCAATGACCTGCTGC
TGGTGCTTTCACCCCGGCTGGACCACACCTGGACAGTCAGTTTCTTTTCAAAGGCAGGTCAGCTGCCCCT
GGTGAAGCCTTACCTGCGGTCAGTCCAGAGCCACAACAACAAGAGTGTGAATGAGGCACTCAACCACCTG
CTGACAGAGGAGGAGGACTATCAGGGCTTAAGGGCATCTATCGATGCCTATGACAACTTTGACAACATCA
GCCTGGCTCAGCAGCTGGAGAAGCATCAGCTGATGGAGTTCAGGTGCATTGCGGCCTATCTGTACAAGGG
CAATAACTGGTGGGCCCAGAGCGTGGAGCTCTGCAAGAAGGATCATCTCTACAAGGATGCCATGCAGCAT
GCTGCAGAGTCGCGGGATGCTGAGCTGGCCCAGAAGTTGCTGCAGTGGTTCCTGGAGGAAGGCAAGAGGG
AGTGCTTCGCAGCTTGTCTCTTCACCTGCTATGACCTGCTTCGCCCAGACATGGTGCTTGAGCTGGCCTG
GAGGCACAACCTCGTGGACTTGGCCATGCCCTACTTCATCCAGGTGATGAGGGAGTACCTGAGCAAGGTG
GACAAACTGGATGCCTTGGAGAGTCTGCGCAAGCAAGAGGAGCATGTGACAGAGCCTGCCCCTCTCGTGT
TTGATTTTGATGGGCATGAATGA

Translation (1640 aa):
MAQILPVRFQEHFQLQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVTIIDMSDPMAPIRRPISAES
AIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMAEEVIFWKWVSVNTVALVTETAVYHWSMEGDSQPMK
MFDRHTSLVGCQVIHYRTDEYQKWLLLVGISAQQNRVVGAMQLYSVDRKVSQPIEGHAAAFAEFKMEGNA
KPATLFCFAVRNPTGGKLHIIEVGQPAAGNQPFVKKAVDVFFPPEAQNDFPVAMQIGAKHGVIYLITKYG
YLHLYDLESGVCICMNRISADTIFVTAPHKPTSGIIGVNKKGQVLSVCVEEDNIVNYATNVLQNPDLGLR
LAVRSNLAGAEKLFVRKFNTLFAQGSYAEAAKVAASAPKGILRTRETVQKFQSIPAQSGQASPLLQYFGI
LLDQGQLNKLESLELCHLVLQQGRKQLLEKWLKEDKLECSEELGDLVKTTDPMLALSVYLRANVPSKVIQ
CFAETGQFQKIVLYAKKVGYTPDWIFLLRGVMKISPEQGLQFSRMLVQDEEPLANISQIVDIFMENSLIQ
QCTSFLLDALKNNRPAEGLLQTWLLEMNLVHAPQVADAILGNKMFTHYDRAHIAQLCEKAGLLQQALEHY
TDLYDIKRAVVHTHLLNPEWLVNFFGSLSVEDSVECLHAMLSANIRQNLQLCVQVASKYHEQLGTQALVE
LFESFKSYKGLFYFLGSIVNFSQDPDVHLKYIQAACKTGQIKEVERICRESSCYNPERVKNFLKEAKLTD
QLPLIIVCDRFGFVHDLVLYLYRNNLQRYIEIYVQKVNPSRTPAVIGGLLDVDCSEEVIKHLIMAVRGQF
STDELVAEVEKRNRLKLLLPWLESQIQEGCEEPATHNALAKIYIDSNNSPECFLRENAYYDSSVVGRYCE
KRDPHLACVAYERGQCDLELIKVCNENSLFKSEARYLVCRKDPELWAHVLEETNPSRRQLIDQVVQTALS
ETRDPEEISVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYISRLDNY
DALDIASIAVSSALYEEAFTVFHKFDMNASAIQVLIEHIGNLDRAYEFAERCNEPAVWSQLAQAQLQKDL
VKEAINSYIRGDDPSSYLEVVQSASRSNNWEDLVKFLQMARKKGRESYIETELIFALAKTSRVSELEDFI
NGPNNAHIQQVGDRCYEEGMYEAAKLLYSNVSNFARLASTLVHLGEYQAAVDNSRKASSTRTWKEVCFAC
MDGQEFRFAQLCGLHIVIHADELEELMCYYQDRGYFEELILLLEAALGLERAHMGMFTELAILYSKFKPQ
KMLEHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAVLTMMSHPTEAWKEGQFKDIITKVAN
VELCYRALQFYLDYKPLLINDLLLVLSPRLDHTWTVSFFSKAGQLPLVKPYLRSVQSHNNKSVNEALNHL
LTEEEDYQGLRASIDAYDNFDNISLAQQLEKHQLMEFRCIAAYLYKGNNWWAQSVELCKKDHLYKDAMQH
AAESRDAELAQKLLQWFLEEGKRECFAACLFTCYDLLRPDMVLELAWRHNLVDLAMPYFIQVMREYLSKV
DKLDALESLRKQEEHVTEPAPLVFDFDGHE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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