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Report for CCDS4649.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4649.1 Public Homo sapiens 6 24 110 108 CCDS HistoryNCBI Gene:64288Re-query CCDS DB by CCDS ID:4649.1Re-query CCDS DB by GeneID:64288See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4649.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000344279.11 ENSP00000345339.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000344279.11Link to Ensembl Protein Viewer:ENSP00000345339.6Re-query CCDS DB by Nucleotide ID:ENST00000344279Re-query CCDS DB by Protein ID:ENSP00000345339
Original member Current member EBI ENST00000396838.6 ENSP00000380050.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000396838.6Link to Ensembl Protein Viewer:ENSP00000380050.2Re-query CCDS DB by Nucleotide ID:ENST00000396838Re-query CCDS DB by Protein ID:ENSP00000380050
Original member Current member EBI ENST00000414429.5 ENSP00000390076.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000414429.5Link to Ensembl Protein Viewer:ENSP00000390076.1Re-query CCDS DB by Nucleotide ID:ENST00000414429Re-query CCDS DB by Protein ID:ENSP00000390076
Original member Current member EBI ENST00000439158.5 ENSP00000413705.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000439158.5Link to Ensembl Protein Viewer:ENSP00000413705.1Re-query CCDS DB by Nucleotide ID:ENST00000439158Re-query CCDS DB by Protein ID:ENSP00000413705
Original member NCBI NM_001135215.1 NP_001128687.1 Accepted not alive Link to Nucleotide Sequence:NM_001135215.1Link to Protein Sequence:NP_001128687.1Re-query CCDS DB by Nucleotide ID:NM_001135215Re-query CCDS DB by Protein ID:NP_001128687Link to BLAST:NP_001128687.1
Original member Current member NCBI NM_001135216.1 NP_001128688.1 Accepted alive Link to Nucleotide Sequence:NM_001135216.1Link to Protein Sequence:NP_001128688.1Re-query CCDS DB by Nucleotide ID:NM_001135216Re-query CCDS DB by Protein ID:NP_001128688Link to BLAST:NP_001128688.1
Original member Current member NCBI NM_001243241.1 NP_001230170.1 Accepted alive Link to Nucleotide Sequence:NM_001243241.1Link to Protein Sequence:NP_001230170.1Re-query CCDS DB by Nucleotide ID:NM_001243241Re-query CCDS DB by Protein ID:NP_001230170Link to BLAST:NP_001230170.1
Original member Current member NCBI NM_030899.5 NP_112161.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_030899.5Link to Protein Sequence:NP_112161.3Re-query CCDS DB by Nucleotide ID:NM_030899Re-query CCDS DB by Protein ID:NP_112161Link to BLAST:NP_112161.3
Original member Current member NCBI NM_145909.3 NP_665916.1 Accepted alive Link to Nucleotide Sequence:NM_145909.3Link to Protein Sequence:NP_665916.1Re-query CCDS DB by Nucleotide ID:NM_145909Re-query CCDS DB by Protein ID:NP_665916Link to BLAST:NP_665916.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001128687.1 406 Q96LW9-1 406 100% 0 0
NP_001128688.1 406 Q96LW9-1 406 100% 0 0
NP_001230170.1 406 Q96LW9-1 406 100% 0 0
NP_112161.3 406 Q96LW9-1 406 100% 0 0
NP_665916.1 406 Q96LW9-1 406 100% 0 0

Chromosomal Locations for CCDS 4649.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 28326166 28326854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 28327383 28327533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 28329303 28329683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1221 nt):
ATGGCTTCAACAGAGGAACAGTACGATCTTAAGATTGTGAAAGTGGAGGAAGACCCTATCTGGGACCAAG
AAACCCACCTTCGAGGGAACAACTTTTCTGGCCAAGAAGCCTCCCGACAACTTTTTAGGCAGTTTTGTTA
CCAAGAGACTCCTGGTCCCCGAGAAGCTCTGAGCCGGCTCCGAGAACTCTGTCATCAGTGGCTAAGGCCA
GAAATCCACACCAAAGAGCAAATCTTGGAGCTGCTGGTGCTGGAGCAATTCCTGACTATCCTGCCTGAGG
AGCTCCAGGCCTGGGTGCGGGAGCACCATCCGGAGAGTGGGGAGGAGGCTGTGGCTGTAGTTGAAGATCT
GGAACAAGAGCTTAGTGAGCCAGGGAACCAGGCTCCAGACCATGAACATGGACATTCTGAAGTGCTCTTG
GAGGATGTGGAACATCTGAAGGTCAAGCAGGAACCAACAGACATACAGCTTCAGCCTATGGTGACACAGC
TCAGATATGAATCTTTTTGCCTCCACCAATTTCAAGAACAAGATGGTGAAAGTATACCTGAGAACCAGGA
GTTGGCATCAAAGCAAGAAATCTTAAAAGAAATGGAACATTTGGGGGATAGCAAACTCCAAAGAGATGTA
TCTTTGGATTCTAAGTACAGAGAAACTTGTAAACGAGACAGCAAGGCAGAAAAGCAGCAGGCACATTCCA
CTGGAGAGAGACGCCACAGGTGCAATGAATGTGGGAAAAGCTTCACTAAGAGTTCAGTACTCATTGAGCA
CCAGAGAATCCACACTGGGGAGAAGCCATATGAATGTGAAGAATGTGGGAAGGCCTTCAGCCGGAGGTCA
AGCCTGAATGAACATCGGCGGAGCCACACTGGAGAGAAACCCTATCAATGTAAGGAGTGTGGGAAAGCCT
TCAGTGCCAGCAATGGCCTCACTCGACACAGAAGAATCCACACAGGGGAAAAACCATATGAATGCAAAGT
GTGTGGGAAGGCTTTCCTCCTCAGCTCATGCCTTGTTCAGCATCAGAGGATACACACTGGAGAGAAGCGC
TATCAGTGTCGTGAGTGTGGCAAAGCCTTCATTCAGAATGCAGGGCTTTTCCAGCATCTCCGAGTCCACA
CTGGTGAGAAACCCTATCAGTGCAGTCAGTGCAGTAAACTCTTTAGTAAGCGGACACTTCTTAAGAAACA
TCAGAAAATCCACACTGGAGAGAGACCATAA

Translation (406 aa):
MASTEEQYDLKIVKVEEDPIWDQETHLRGNNFSGQEASRQLFRQFCYQETPGPREALSRLRELCHQWLRP
EIHTKEQILELLVLEQFLTILPEELQAWVREHHPESGEEAVAVVEDLEQELSEPGNQAPDHEHGHSEVLL
EDVEHLKVKQEPTDIQLQPMVTQLRYESFCLHQFQEQDGESIPENQELASKQEILKEMEHLGDSKLQRDV
SLDSKYRETCKRDSKAEKQQAHSTGERRHRCNECGKSFTKSSVLIEHQRIHTGEKPYECEECGKAFSRRS
SLNEHRRSHTGEKPYQCKECGKAFSASNGLTRHRRIHTGEKPYECKVCGKAFLLSSCLVQHQRIHTGEKR
YQCRECGKAFIQNAGLFQHLRVHTGEKPYQCSQCSKLFSKRTLLKKHQKIHTGERP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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