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Report for CCDS4585.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4585.1 Public Homo sapiens 6 H2AC6 24 110 108 CCDS HistoryNCBI Gene:8334Re-query CCDS DB by CCDS ID:4585.1Re-query CCDS DB by GeneID:8334See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4585.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000314088.6 ENSP00000321389.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000314088.6Link to Ensembl Protein Viewer:ENSP00000321389.5Re-query CCDS DB by Nucleotide ID:ENST00000314088Re-query CCDS DB by Protein ID:ENSP00000321389
Original member Current member EBI ENST00000377791.4 ENSP00000367022.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000377791.4Link to Ensembl Protein Viewer:ENSP00000367022.2Re-query CCDS DB by Nucleotide ID:ENST00000377791Re-query CCDS DB by Protein ID:ENSP00000367022
Original member Current member EBI ENST00000602637.1 ENSP00000473534.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000602637.1Link to Ensembl Protein Viewer:ENSP00000473534.1Re-query CCDS DB by Nucleotide ID:ENST00000602637Re-query CCDS DB by Protein ID:ENSP00000473534
Original member Current member NCBI NM_003512.4 NP_003503.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003512.4Link to Protein Sequence:NP_003503.1Re-query CCDS DB by Nucleotide ID:NM_003512Re-query CCDS DB by Protein ID:NP_003503Link to BLAST:NP_003503.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003503.1 130 Q93077 130 100% 0 0

Chromosomal Locations for CCDS 4585.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 26124233 26124625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (393 nt):
ATGTCTGGACGTGGTAAGCAAGGAGGCAAAGCTCGCGCCAAAGCGAAATCCCGCTCTTCTCGCGCTGGTC
TCCAGTTCCCGGTGGGCCGAGTGCACCGCCTGCTCCGTAAAGGCAACTACGCAGAGCGGGTTGGGGCAGG
CGCGCCGGTGTACCTGGCGGCGGTGTTAGAGTACCTGACCGCCGAGATCCTGGAGCTGGCCGGCAACGCG
GCTCGCGACAACAAGAAGACTCGCATCATCCCGCGCCACTTGCAGCTGGCCATCCGCAACGACGAGGAGC
TCAACAAACTGCTAGGCCGGGTGACCATTGCTCAGGGCGGCGTCCTTCCTAACATCCAGGCCGTGCTTCT
GCCTAAGAAGACCGAGAGTCACCACAAGGCCAAGGGCAAGTGA

Translation (130 aa):
MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNA
ARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTESHHKAKGK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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