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Report for CCDS45718.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45718.1 Public Homo sapiens 17 ARL17A 24 110 108 CCDS HistoryNCBI Gene:51326Re-query CCDS DB by CCDS ID:45718.1Re-query CCDS DB by GeneID:51326See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45718.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000336125.6 ENSP00000337478.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000336125.6Link to Ensembl Protein Viewer:ENSP00000337478.6Re-query CCDS DB by Nucleotide ID:ENST00000336125Re-query CCDS DB by Protein ID:ENSP00000337478
Original member Current member EBI ENST00000706261.1 ENSP00000516308.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000706261.1Link to Ensembl Protein Viewer:ENSP00000516308.1Re-query CCDS DB by Nucleotide ID:ENST00000706261Re-query CCDS DB by Protein ID:ENSP00000516308
Original member Current member NCBI NM_001113738.2 NP_001107210.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001113738.2Link to Protein Sequence:NP_001107210.1Re-query CCDS DB by Nucleotide ID:NM_001113738Re-query CCDS DB by Protein ID:NP_001107210Link to BLAST:NP_001107210.1

Chromosomal Locations for CCDS 45718.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 46557356 46557630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46570759 46570869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46576175 46576322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (534 nt):
ATGGGAAACATTTTTGAAAAGCTCTTTAAAAGTCTACTTGGGAAAAAAAAGATGCGGATTCTTATATTGA
GTTTGGATACAGCTGGAAAAACCACCATCTTGTATAAATTGAAGCTGGGGGAGACTGTGCCTGCCGTCCC
TACAGTAGGTTTCTGTGTGGAGACAGTAGAATATAAAAATAACACCTTCGCTGTCTGGGATGTTGGCAGC
CACTTCAAAATCAGACCTCTGTGGCAGCATTTTTTCCAGAACACAAAAGGTGCCAGAAGCCCAGGAAGCA
CACATCAAGGCTCACTTGCCAGCGGGGTGCTGCCAATAAAATGTAGTCACGTGGAATTTGGAATGTGGAA
AGGAGGTAGAAGTCATCCTTTCCTCCCCCATAGCAGCAGGTGTGCAGGCTCTGGTGGTCAGCTGGACTCC
ATACTCCCCCACCAGTCACCAGCCTGGGGACCGTGGGGCTGCAAGGACCTCAGCAGCGGTTTCCCAAGTT
TCCTGACTTCTTCCATCCTCTGGAAATCAGCTGTGGTAAAGTAG

Translation (177 aa):
MGNIFEKLFKSLLGKKKMRILILSLDTAGKTTILYKLKLGETVPAVPTVGFCVETVEYKNNTFAVWDVGS
HFKIRPLWQHFFQNTKGARSPGSTHQGSLASGVLPIKCSHVEFGMWKGGRSHPFLPHSSRCAGSGGQLDS
ILPHQSPAWGPWGCKDLSSGFPSFLTSSILWKSAVVK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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