NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS4481.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4481.1 Public Homo sapiens 6 NQO2 24 110 108 CCDS HistoryNCBI Gene:4835Re-query CCDS DB by CCDS ID:4481.1Re-query CCDS DB by GeneID:4835See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4481.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000338130.7 ENSP00000337773.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000338130.7Link to Ensembl Protein Viewer:ENSP00000337773.2Re-query CCDS DB by Nucleotide ID:ENST00000338130Re-query CCDS DB by Protein ID:ENSP00000337773
Original member Current member EBI ENST00000380430.6 ENSP00000369795.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000380430.6Link to Ensembl Protein Viewer:ENSP00000369795.1Re-query CCDS DB by Nucleotide ID:ENST00000380430Re-query CCDS DB by Protein ID:ENSP00000369795
Original member Current member EBI ENST00000380455.11 ENSP00000369822.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000380455.11Link to Ensembl Protein Viewer:ENSP00000369822.4Re-query CCDS DB by Nucleotide ID:ENST00000380455Re-query CCDS DB by Protein ID:ENSP00000369822
Original member Current member NCBI NM_000904.6 NP_000895.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_000904.6Link to Protein Sequence:NP_000895.2Re-query CCDS DB by Nucleotide ID:NM_000904Re-query CCDS DB by Protein ID:NP_000895Link to BLAST:NP_000895.2
Original member Current member NCBI NM_001290221.2 NP_001277150.1 Accepted alive Link to Nucleotide Sequence:NM_001290221.2Link to Protein Sequence:NP_001277150.1Re-query CCDS DB by Nucleotide ID:NM_001290221Re-query CCDS DB by Protein ID:NP_001277150Link to BLAST:NP_001277150.1
Original member Current member NCBI NM_001318940.2 NP_001305869.1 Accepted alive Link to Nucleotide Sequence:NM_001318940.2Link to Protein Sequence:NP_001305869.1Re-query CCDS DB by Nucleotide ID:NM_001318940Re-query CCDS DB by Protein ID:NP_001305869Link to BLAST:NP_001305869.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000895.2 231 P16083 231 100% 0 0
NP_001277150.1 231 P16083 231 100% 0 0
NP_001305869.1 231 P16083 231 100% 0 0

Chromosomal Locations for CCDS 4481.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 3006553 3006559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 3010025 3010189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 3012544 3012674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 3015530 3015643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 3016884 3016985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 3019479 3019655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (696 nt):
ATGGCAGGTAAGAAAGTACTCATTGTCTATGCACACCAGGAACCCAAGTCTTTCAACGGATCCTTGAAGA
ATGTGGCTGTAGATGAACTGAGCAGGCAGGGCTGCACCGTCACAGTGTCTGATTTGTATGCCATGAACCT
TGAGCCGAGGGCCACAGACAAAGATATCACTGGTACTCTTTCTAATCCTGAGGTTTTCAATTATGGAGTG
GAAACCCACGAAGCCTACAAGCAAAGGTCTCTGGCTAGCGACATCACTGATGAGCAGAAAAAGGTTCGGG
AGGCTGACCTAGTGATATTTCAGTTCCCGCTGTACTGGTTCAGCGTGCCAGCCATCCTGAAGGGCTGGAT
GGATAGGGTGCTGTGCCAGGGCTTTGCCTTTGACATCCCAGGATTCTACGATTCCGGTTTGCTCCAGGGT
AAACTAGCGCTCCTTTCCGTAACCACGGGAGGCACGGCCGAGATGTACACGAAGACAGGAGTCAATGGAG
ATTCTCGATACTTCCTGTGGCCACTCCAGCATGGCACATTACACTTCTGTGGATTTAAAGTCCTTGCCCC
TCAGATCAGCTTTGCTCCTGAAATTGCATCCGAAGAAGAAAGAAAGGGGATGGTGGCTGCGTGGTCCCAG
AGGCTGCAGACCATCTGGAAGGAAGAGCCCATCCCCTGCACAGCCCACTGGCACTTCGGGCAATAA

Translation (231 aa):
MAGKKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAMNLEPRATDKDITGTLSNPEVFNYGV
ETHEAYKQRSLASDITDEQKKVREADLVIFQFPLYWFSVPAILKGWMDRVLCQGFAFDIPGFYDSGLLQG
KLALLSVTTGGTAEMYTKTGVNGDSRYFLWPLQHGTLHFCGFKVLAPQISFAPEIASEEERKGMVAAWSQ
RLQTIWKEEPIPCTAHWHFGQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH