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Report for CCDS44472.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44472.1 Public Homo sapiens 10 LDB1 24 110 108 CCDS HistoryNCBI Gene:8861Re-query CCDS DB by CCDS ID:44472.1Re-query CCDS DB by GeneID:8861See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 44472.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000673968.1 ENSP00000501277.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000673968.1Link to Ensembl Protein Viewer:ENSP00000501277.1Re-query CCDS DB by Nucleotide ID:ENST00000673968Re-query CCDS DB by Protein ID:ENSP00000501277
Original member Current member NCBI NM_001113407.3 NP_001106878.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001113407.3Link to Protein Sequence:NP_001106878.1Re-query CCDS DB by Nucleotide ID:NM_001113407Re-query CCDS DB by Protein ID:NP_001106878Link to BLAST:NP_001106878.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001106878.1 411 Q86U70-1 411 100% 0 0

Chromosomal Locations for CCDS 44472.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 102108093 102108323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 102109029 102109177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 102109384 102109507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 102109600 102109683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 102109921 102110043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 102110529 102110701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 102110869 102110971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 102111069 102111144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 102111256 102111300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 102111434 102111536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 102120086 102120110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1236 nt):
ATGTCAGTGGGCTGTGCCTGTCCTGGTTGTTCCTCAAAGTCATTCAAGCTGTACTCGCCGAAGGAGCCCC
CGAACGGCAACGCCTTTCCCCCCTTCCATCCCGGCACCATGCTGGATAGGGATGTGGGCCCAACTCCCAT
GTATCCGCCTACATACCTGGAGCCAGGGATTGGGAGGCACACACCATATGGCAACCAAACTGACTACAGA
ATATTTGAGCTTAACAAACGGCTTCAGAACTGGACAGAGGAGTGTGACAATCTCTGGTGGGATGCATTCA
CGACTGAGTTCTTTGAGGATGATGCCATGTTGACCATCACTTTCTGCCTGGAGGATGGACCAAAGAGATA
TACCATTGGCCGGACCCTGATCCCACGCTACTTCCGCAGCATCTTTGAGGGGGGTGCTACGGAGCTGTAC
TATGTTCTTAAGCACCCCAAGGAGGCATTCCACAGCAACTTTGTGTCCCTCGACTGTGACCAGGGCAGCA
TGGTGACCCAGCATGGCAAGCCCATGTTCACCCAGGTGTGTGTGGAGGGCCGGTTGTACCTGGAGTTCAT
GTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAGCACCGAGAGCTCATCCCCCGC
AGCATCCTTGCCATGCATGCCCAAGACCCCCAGATGTTGGATCAGCTCTCCAAAAACATCACTCGGTGTG
GGCTGTCCAATTCCACTCTCAACTACCTCCGACTCTGTGTGATACTCGAGCCCATGCAAGAGCTCATGTC
ACGCCACAAGACCTACAGCCTCAGCCCCCGCGACTGCCTCAAGACCTGCCTTTTCCAGAAGTGGCAGCGC
ATGGTAGCACCCCCTGCGGAGCCCACACGTCAGCAGCCCAGCAAACGGCGGAAACGGAAGATGTCAGGGG
GCAGCACCATGAGCTCTGGTGGTGGCAACACCAACAACAGCAACAGCAAGAAGAAGAGCCCAGCTAGCAC
CTTCGCCCTCTCCAGCCAGGTACCTGATGTGATGGTGGTGGGGGAGCCCACCCTGATGGGCGGGGAGTTC
GGGGACGAGGACGAGAGGCTCATCACCCGGCTGGAGAACACCCAGTTTGACGCAGCCAACGGCATTGACG
ACGAGGACAGCTTTAACAACTCCCCTGCACTGGGCGCCAACAGCCCCTGGAACAGCAAGCCTCCGTCCAG
CCAAGAAAGCAAATCGGAGAACCCCACGTCACAGGCCTCCCAGTAA

Translation (411 aa):
MSVGCACPGCSSKSFKLYSPKEPPNGNAFPPFHPGTMLDRDVGPTPMYPPTYLEPGIGRHTPYGNQTDYR
IFELNKRLQNWTEECDNLWWDAFTTEFFEDDAMLTITFCLEDGPKRYTIGRTLIPRYFRSIFEGGATELY
YVLKHPKEAFHSNFVSLDCDQGSMVTQHGKPMFTQVCVEGRLYLEFMFDDMMRIKTWHFSIRQHRELIPR
SILAMHAQDPQMLDQLSKNITRCGLSNSTLNYLRLCVILEPMQELMSRHKTYSLSPRDCLKTCLFQKWQR
MVAPPAEPTRQQPSKRRKRKMSGGSTMSSGGGNTNNSNSKKKSPASTFALSSQVPDVMVVGEPTLMGGEF
GDEDERLITRLENTQFDAANGIDDEDSFNNSPALGANSPWNSKPPSSQESKSENPTSQASQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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