NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS4439.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4439.1 Public Homo sapiens 5 ZNF354B 24 110 108 CCDS HistoryNCBI Gene:117608Re-query CCDS DB by CCDS ID:4439.1Re-query CCDS DB by GeneID:117608See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4439.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000322434.8 ENSP00000327143.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000322434.8Link to Ensembl Protein Viewer:ENSP00000327143.3Re-query CCDS DB by Nucleotide ID:ENST00000322434Re-query CCDS DB by Protein ID:ENSP00000327143
Original member Current member NCBI NM_058230.3 NP_478137.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_058230.3Link to Protein Sequence:NP_478137.1Re-query CCDS DB by Nucleotide ID:NM_058230Re-query CCDS DB by Protein ID:NP_478137Link to BLAST:NP_478137.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_478137.1 612 Q96LW1 612 100% 0 0

Chromosomal Locations for CCDS 4439.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 178861048 178861080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 178866244 178866370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 178866976 178867071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 178882709 178884291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1839 nt):
ATGGCTGCTGGGCAGCGGGAAGCGAGGCCCCAGGTGTCACTGACATTCGAGGACGTGGCTGTGCTCTTTA
CCTGGGATGAGTGGAGAAAGCTGGCTCCTTCTCAGAGAAACTTGTACCGGGATGTGATGCTGGAGAACTA
TAGGAACCTGGTCTCACTGGGACTCTCATTTACCAAACCAAAAGTCATCTCCCTGTTGCAGCAAGGAGAA
GATCCCTGGGAGGTGGAGAAAGACAGTTCTGGTGTCTCCTCTCTAGGATGTAAGAGCACACCTAAAATGA
CAAAGTCAACTCAAACTCAGGATTCATTTCAGGAGCAGATAAGGAAAAGATTGAAAAGGGATGAACCCTG
GAACTTCATATCAGAAAGATCCTGCATATATGAAGAGAAATTAAAGAAACAGCAGGACAAAAATGAAAAT
TTACAAATAATTTCAGTTGCCCATACAAAAATCCTTACTGTAGATAGAAGCCATAAAAATGTTGAATTTG
GCCAAAACTTCTACCTGAAATCAGTCTTCATTAAGCAACAGAGATTTGCTAAAGAAAAAACTCCATCAAA
ATGTGAAATACAAAGAAATAGTTTCAAGCAGAATTCAAATTTACTTAACCAATCAAAAATCAAAACAGCA
GAGAAACGCTATAAATGCAGTACATGTGAAAAAGCCTTCATTCACAATTCATCCCTTCGTAAACATCAGA
AAAACCACACTGGAGAAAAATTATTTAAATGTAAAGAATGTTTAAAAGCTTTCAGCCAAAGTTCTGCTCT
TATTCAACATCAAAGAACTCATACAGGAGAGAAACCCTATATATGTAAAGAATGTGGGAAAGCCTTCAGC
CATAGTGCATCCCTTTGTAAGCATTTAAGGACCCATACTGTGGAGAAATGCTATAGATGTAAAGAATGTG
GTAAATCCTTCAGTCGAAGGTCTGGGCTTTTTATACATCAAAAAATCCATGCTCAAGAAAATCCCCATAA
ATACAATCCAGGCAGGAAGGCATCCAGTTACAGCACTTCCCTTTCTGGAAGTCAGAAAATTCATCTCAGA
AAGAAGTCCTACTTATGTAATGAATGTGGCAACACCTTTAAGTCTAGCTCATCCCTTCGTTATCATCAGA
GAATTCACACTGGAGAGAAGCCTTTTAAATGTAGTGAATGTGGGAGAGCCTTCAGCCAGAGTGCCTCTCT
TATTCAACATGAAAGAATTCACACCGGAGAAAAGCCCTATAGATGCAATGAATGTGGGAAAGGCTTTACT
TCTATTTCACGACTTAATAGACACCGAATAATTCATACTGGAGAGAAATTGTATAATTGTAATGAATGTG
GTAAAGCCTTAAGCTCCCACTCAACACTTATTATTCATGAGCGAATTCATACTGGAGAAAAACCATGTAA
ATGTAAAGTATGTGGAAAAGCCTTCAGACAGAGTTCCGCTCTCATTCAACATCAGAGAATGCATACTGGA
GAAAGACCCTATAAGTGTAACGAATGTGACAAAACATTCAGGTGTAACTCATCGCTTAGTAATCACCAGA
GAATTCATACTGGAGAGAAACCATATCGATGTTTAGAATGTGGGATGTCTTTTGGCCAAAGTGCAGCTCT
TATACAACATCAGAGGATTCATACAGGAGAAAAACCCTTTAAATGTAATACATGTGGAAAAACTTTTAGA
CAAAGCTCATCACTTATTGCACATCAAAGAATTCATACTGGAGAGAAACCCTATGAATGTAATGCATGTG
GGAAACTCTTTAGCCAGAGGTCATCCCTTACTAATCATTATAAAATTCACATTGAAGAGGACTCCTTAAA
AGCCGATTTGCATGTGTGA

Translation (612 aa):
MAAGQREARPQVSLTFEDVAVLFTWDEWRKLAPSQRNLYRDVMLENYRNLVSLGLSFTKPKVISLLQQGE
DPWEVEKDSSGVSSLGCKSTPKMTKSTQTQDSFQEQIRKRLKRDEPWNFISERSCIYEEKLKKQQDKNEN
LQIISVAHTKILTVDRSHKNVEFGQNFYLKSVFIKQQRFAKEKTPSKCEIQRNSFKQNSNLLNQSKIKTA
EKRYKCSTCEKAFIHNSSLRKHQKNHTGEKLFKCKECLKAFSQSSALIQHQRTHTGEKPYICKECGKAFS
HSASLCKHLRTHTVEKCYRCKECGKSFSRRSGLFIHQKIHAQENPHKYNPGRKASSYSTSLSGSQKIHLR
KKSYLCNECGNTFKSSSSLRYHQRIHTGEKPFKCSECGRAFSQSASLIQHERIHTGEKPYRCNECGKGFT
SISRLNRHRIIHTGEKLYNCNECGKALSSHSTLIIHERIHTGEKPCKCKVCGKAFRQSSALIQHQRMHTG
ERPYKCNECDKTFRCNSSLSNHQRIHTGEKPYRCLECGMSFGQSAALIQHQRIHTGEKPFKCNTCGKTFR
QSSSLIAHQRIHTGEKPYECNACGKLFSQRSSLTNHYKIHIEEDSLKADLHV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH