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Report for CCDS43878.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43878.1 Public Homo sapiens 9 CFAP157 24 110 108 CCDS HistoryNCBI Gene:286207Re-query CCDS DB by CCDS ID:43878.1Re-query CCDS DB by GeneID:286207See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43878.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000373295.7 ENSP00000362392.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000373295.7Link to Ensembl Protein Viewer:ENSP00000362392.1Re-query CCDS DB by Nucleotide ID:ENST00000373295Re-query CCDS DB by Protein ID:ENSP00000362392
Original member Current member NCBI NM_001012502.3 NP_001012520.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001012502.3Link to Protein Sequence:NP_001012520.2Re-query CCDS DB by Nucleotide ID:NM_001012502Re-query CCDS DB by Protein ID:NP_001012520Link to BLAST:NP_001012520.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001012520.2 520 Q5JU67-1 520 100% 0 0

Chromosomal Locations for CCDS 43878.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 127707032 127707192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 127709422 127709693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 127710601 127710754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 127711229 127711496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 127711820 127711950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 127712199 127712349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 127712709 127712875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 127713020 127713206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 127713834 127713905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1563 nt):
ATGGCTCCCAAAAAGAGTGTGAGCAAGGCAGGCAAGGAGCTTGAAGTCAAGAAGAAAGGGGGCAAGAAGG
AGCCGGTGGTGGCCGTGGAGCCGCCTCTGGCCAAGGAGATGAAGGAGTTCTACCACATCCAGATCCGAGA
CCTGGAGGACCGGCTAGCCCGGTACCAGCGGAAGTGGGATGAGCTGGCTGTGCAGGAGAAGATGTTCCGC
CAGGAGTTTGAGCAGCTGGCCAATAACAAGAAGGAGATTGTGGCCTTCCTCAAGCGCACGCTCAACCAGC
AGGTGGATGAGATCACAGACCTCAACGAGCAGCTCCAGAACTTGCAGCTAGCCAAAGAGATGGAGAAGGA
TGCCTTCGAGGCGCAGCTGGCCCAGGTGCGCCACGAGTTCCAGGAGACCAAGGACCAGCTCACCACGGAG
AACATCATCCTTGGGGGGAAGCTGGCAGCCCTGGAGGAGTTCCGGCTGCAGAAAGAGGAGGTCACGGACA
AGTTCACATTGCTGGAGGAGCAGGTGCGGAAGCAGGAGAATGAGTTCAGGGACTATGCATACAACCTGGA
GAAGAAGTCGGTGCTGGACAAGGACAGACTGAGGAAAGAGATCATCCAGCGCGTGAACCTCGTGGCCAAT
GAGTTCCACAAGGTGACCACGAACCGGATGTGGGAGACAACCAAGCGGGCCATCAAAGAGAACAACGGCA
TTACCCTGCAGATGGCCAGGGTCTCCCAGCAAGGCATGAAGCTGCTGCAGGAGAATGAGCAGCTCAAGGG
AAGACAGAACAATCTGTGCAAACAGCTGGAGCTGCTGGAGAACACCCAGAAGGTCATGGCCAGGCACAAA
AGAGGCCACCAGAAGATCATCCTCATGCTGACTAAGAAGTGCCAGGAGCAGCAGCAGGACACCAAGGAGG
CCGAGGAGCTGCGCCTCCTGCTGAGCCAGTTGGAGCAGAGATCCCTGCAGCTGCAGGTGGATAACCAGGC
ACTGAAGAGCCAGAGAGACCAGCTGAGCCTGCAGCTGGAGCAGCAGCAGGTGGATTTGCAGCGGCTACAG
CAGGAACTGGCTAATGAGCAGAAGGTTCGGGCCAGCCTGGAGGCGGCTCTGGTCCAGGCCACCTCCTTCC
TACAGAACATTCTGCAGATGCACCGCGATGAAGAGGACAGTGACGTTGACGTGACGTTCCAGCCATGGCA
CAAGGAGATGCTGCAGCAACTGCTGGTCATGCTCAGCTCCACTGTGGCCACGAGACCTCAGAAGGCTGCG
TGTCCCCACCAGGAGTCACAGTCCCATGGCCCACCCAAGGAGAGCCGGCCCAGCATCCAGCTGCCCAGGA
CTGGGTCTCTGCTGCCGCAGCTCTCTGACATCACCCCCTACCAGCCGGGGGATCTAGGCCTGGTACCTCG
CCAGGTCCACATCCCACCCAACCCCCAGGACCTCAGGCTGCTGTCATATATCACCCGTGTGGGGACCTTC
CGGGCACACAGCAGCCCTGAGATGCGTGCCCCTGGTTCTCTAAAAAGGCTTGAAAAGTTTAGTCTTCCTG
AAGTTCCCCTACGTCCCAAGTAG

Translation (520 aa):
MAPKKSVSKAGKELEVKKKGGKKEPVVAVEPPLAKEMKEFYHIQIRDLEDRLARYQRKWDELAVQEKMFR
QEFEQLANNKKEIVAFLKRTLNQQVDEITDLNEQLQNLQLAKEMEKDAFEAQLAQVRHEFQETKDQLTTE
NIILGGKLAALEEFRLQKEEVTDKFTLLEEQVRKQENEFRDYAYNLEKKSVLDKDRLRKEIIQRVNLVAN
EFHKVTTNRMWETTKRAIKENNGITLQMARVSQQGMKLLQENEQLKGRQNNLCKQLELLENTQKVMARHK
RGHQKIILMLTKKCQEQQQDTKEAEELRLLLSQLEQRSLQLQVDNQALKSQRDQLSLQLEQQQVDLQRLQ
QELANEQKVRASLEAALVQATSFLQNILQMHRDEEDSDVDVTFQPWHKEMLQQLLVMLSSTVATRPQKAA
CPHQESQSHGPPKESRPSIQLPRTGSLLPQLSDITPYQPGDLGLVPRQVHIPPNPQDLRLLSYITRVGTF
RAHSSPEMRAPGSLKRLEKFSLPEVPLRPK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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