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Report for CCDS43796.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43796.1 Public Homo sapiens 9 PHF24 24 110 108 CCDS HistoryNCBI Gene:23349Re-query CCDS DB by CCDS ID:43796.1Re-query CCDS DB by GeneID:23349See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43796.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000242315.4 ENSP00000242315.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000242315.4Link to Ensembl Protein Viewer:ENSP00000242315.3Re-query CCDS DB by Nucleotide ID:ENST00000242315Re-query CCDS DB by Protein ID:ENSP00000242315
Original member Current member NCBI NM_001304333.3 NP_001291262.1 Accepted alive Link to Nucleotide Sequence:NM_001304333.3Link to Protein Sequence:NP_001291262.1Re-query CCDS DB by Nucleotide ID:NM_001304333Re-query CCDS DB by Protein ID:NP_001291262Link to BLAST:NP_001291262.1
Original member Current member NCBI NM_015297.3 NP_056112.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015297.3Link to Protein Sequence:NP_056112.1Re-query CCDS DB by Nucleotide ID:NM_015297Re-query CCDS DB by Protein ID:NP_056112Link to BLAST:NP_056112.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001291262.1 400 Q9UPV7 400 100% 0 0
NP_056112.1 400 Q9UPV7 400 100% 0 0

Chromosomal Locations for CCDS 43796.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 34971299 34971676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 34972346 34972531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 34976152 34976230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 34976535 34976740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 34977083 34977243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 34977546 34977641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 34978015 34978111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1203 nt):
ATGGGGGTGTTGATGTCCAAGCGGCAGACAGTGGAGCAGGTGCAGAAGGTGAGTCTGGCTGTGTCTGCTT
TCAAGGATGGGCTGCGGGACAGGCCTTCCATCCGACGCACAGGTGAGCTGCCAGGGTCCCGCCGTGGCAC
TGTAGAGGGCTCCGTCCAGGAGGTACAGGAGGAGAAGGAAGCAGAAGCAGGAACCTCGGTGGTCCAGGAA
GAGAGTAGTGCCGGCCGCGCAGCCTGGGAGCGGCTCCGAGATGGGCGCGGCGTGGAGCCTGAGGAGTTTG
ACAGGACAAGTCGATTCACACCCCCTGCGTTCATCCGCCCCACCCGGAAGCTGGATGATGACAAACCTCC
AGAAATCTGCCTGGAGCCCAGAGAGCCTGTTGTCAACGATGAGATGTGTGATGTTTGTGAGGTCTGGACA
GCTGAGAGCCTCTTCCCGTGCAGGGTCTGCACCAGGGTTTTCCATGATGGCTGCCTGCGCCGCATGGGCT
ACATCCAAGGAGACAGTGCAGCGGAGGTGACGGAGATGGCCCACACAGAAACAGGCTGGAGCTGCCACTA
CTGTGACAACATCAACTTGCTGCTTACTGAGGAGGAAATGTATAGCCTCACGGAGACCTTTCAGCGGTGT
AAAGTCATCCCTGATTGCTCCCTGACACTGGAGGACTTTCTGCGTTACCGCCACCAAGCAGCCAAGCGGG
GGGACCGTGACAGGGCCCTGAGTGAGGAGCAAGAAGAGCAGGCGGCCCGCCAGTTTGCTGCCCTGGACCC
TGAACATCGAGGCCACATAGAGTGGCCTGACTTCTTGTCCCATGAGTCCCTCCTGCTTCTGCAGCAGTTG
CGTCCCCAGAACTCTCTGTTGAGGCTTCTGACAGTGAAGGAGCGGGAGCGAGCCCGAGCCGCCTTCCTGG
CTCGGGGCAGTGGGAGCACCGTCAGTGAGGCAGAGTGCCGCCGGGCCCAGCACTCTTGGTTTTGCAAACG
GTTCCCAGAGGCTCCTTCCTGCAGTGTCAGCATCAGCCATGTGGGTCCCATCGCAGATAGCAGCCCAGCC
AGCAGCAGCAGCAAGAGTCAGGACAAGACCCTGCTGCCCACAGAGCAGGAGTCCAGATTTGTGGACTGGC
CTACCTTCCTGCAAGAGAATGTCCTCTACATCCTGGCTGCTCGCCCCAACAGCGCAGCCATTCACCTGAA
GCCCCCAGGATAG

Translation (400 aa):
MGVLMSKRQTVEQVQKVSLAVSAFKDGLRDRPSIRRTGELPGSRRGTVEGSVQEVQEEKEAEAGTSVVQE
ESSAGRAAWERLRDGRGVEPEEFDRTSRFTPPAFIRPTRKLDDDKPPEICLEPREPVVNDEMCDVCEVWT
AESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDNINLLLTEEEMYSLTETFQRC
KVIPDCSLTLEDFLRYRHQAAKRGDRDRALSEEQEEQAARQFAALDPEHRGHIEWPDFLSHESLLLLQQL
RPQNSLLRLLTVKERERARAAFLARGSGSTVSEAECRRAQHSWFCKRFPEAPSCSVSISHVGPIADSSPA
SSSSKSQDKTLLPTEQESRFVDWPTFLQENVLYILAARPNSAAIHLKPPG


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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