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Report for CCDS43508.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43508.1 Public Homo sapiens 6 ECT2L 24 110 108 CCDS HistoryNCBI Gene:345930Re-query CCDS DB by CCDS ID:43508.1Re-query CCDS DB by GeneID:345930See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43508.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000367682.6 ENSP00000356655.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000367682.6Link to Ensembl Protein Viewer:ENSP00000356655.2Re-query CCDS DB by Nucleotide ID:ENST00000367682Re-query CCDS DB by Protein ID:ENSP00000356655
Original member Current member EBI ENST00000541398.7 ENSP00000442307.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000541398.7Link to Ensembl Protein Viewer:ENSP00000442307.2Re-query CCDS DB by Nucleotide ID:ENST00000541398Re-query CCDS DB by Protein ID:ENSP00000442307
Original member Current member NCBI NM_001077706.3 NP_001071174.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001077706.3Link to Protein Sequence:NP_001071174.1Re-query CCDS DB by Nucleotide ID:NM_001077706Re-query CCDS DB by Protein ID:NP_001071174Link to BLAST:NP_001071174.1
Original member Current member NCBI NM_001195037.2 NP_001181966.1 Accepted alive Link to Nucleotide Sequence:NM_001195037.2Link to Protein Sequence:NP_001181966.1Re-query CCDS DB by Nucleotide ID:NM_001195037Re-query CCDS DB by Protein ID:NP_001181966Link to BLAST:NP_001181966.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001071174.1 904 Q008S8 904 100% 0 0
NP_001181966.1 904 Q008S8 904 100% 0 0

Chromosomal Locations for CCDS 43508.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 138813275 138813340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 138814491 138814603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 138838352 138838514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 138842979 138843231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 138844412 138844580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 138846539 138846677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 138849269 138849434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 138854026 138854154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 138862627 138862719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 138864996 138865178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 138868103 138868206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 138876472 138876558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 138880957 138881171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 138882724 138882871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 138885506 138885579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 138885674 138885830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 138886857 138886922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 138888943 138889031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 138900948 138901120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 138902500 138902627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2715 nt):
ATGGAGAGCTTCCACACCAGATTTAGTGCCTGGACACCTTTTAGCAACAAGTCATTAAATAGACAGCTCT
TTCAGGAAAGAGTGGCTCTTATAAGTCATTGGTTTGACCTCTGGACTAACAAGCAACGTCAAGAATTCTT
ATTCGCAATTTTTTTAAGATGCACTAAATCACAATTAAGGTTTGTCCAAGACTGGTTTTCAGAAAGGATG
CAAGTGGCCAAAGTGGACTTCTCTACAGTGTTACCACGCTTCATTTCTCTATATATCTTTTCCTTTTTGA
GTCCGAAAGATTTGTGTGCCGCTGCCCAAGTCAGCTGGCCCTGGAAGTTTTTAACTGAACAGGATTGCTT
ATGGATGCCCAAATGCGTTAAGTTCGGATGGTTTCTGCCCTATACTCCAACAGATAATGAGTATGGTGCT
TGGAAGCGCCATTACATTGCTTGTGTGTCCCACTTAGACTGGCTGACACCTAGGGAGGCTGCTGCTACTT
ATGGGACGCTGAATGAACCCAAAACAGAAGATGAGGAACTACTGGAGAGACAAAGAGAAAAGTGCCTGAG
GAAAAGAATTTGGGAGAAAATTGCACTACGTAAGAAGGAGTTATTCAAAGTTCGACCCCCTTGGGTGAGT
GGAACTTGCTGCTCTAGCGTGCTAAAGCCCAGATGCCAACCACGCCTCTCCCAGACTGTAAGGGAGCGAG
TGGGATTACATGAAGCTTTGGAGAAACAGCTTGTTTTGACATCGTTAGAAACCTTGCCCAAGCGAAGCAA
TATTTCTGGAAGCCATTCCTACCCTTTATTATCAAAGAAAAATTGGCATGGAGTTCATAAAAATGATGAC
AGATCTTCATATGCTCTCCGGCCACACTTCATGTTAATATCATCCCGGATTCCTGCGTATGAGATGGTGA
TGGAGAGTGTGAAGGCTGGTGTTGTTTCTGTGGTATATGAACACAGCGTAACCTTGGAAAGCCTTCTGTA
TCTTATAGAAAAAGCTCTGGATGGGCAGAAGGCACAGAGCATCGGAATATTTAGCGATGGAGACAGCAGA
GAAATCAATTTACTCCAAGGCTATAAAATTGGTGTTAAAAATTTACTGAGGCCTGAAGTGAGAGATTTCT
GGGAGAAATTAGGAAGCTATGTGGCCACTGAAGAAGAAGGGGGTCACGTGGACTTCTTCGTGCCCCTTGG
AGCATCAGAGGCAGGAATTGAAGTTCTTTCCCAGCTGTCTCAACTAACTGGCACGTTCTTTACGGCCCCC
ACTGGGATTGCAACTGGCTCTTACCAGCACATTCTTAGTGATTGGCTGGGATCCCAATGGGGAAAGGCCC
CCTCTTCCATCTACTTCTGCGAATCGAAGCTACAGACGTGGTCCAGCTTCACAGACTTCCTAGAAGAAAC
CTTGAAAACAGTAAGGAAGCAGCTGTATCCTTTCTTCAAGGAACTGCAGAAGAGCATCAGTGGCAGGATG
ATAGGGCAGTTTATGTTTGACACCATGGGTATGACCAACATTCTAAACAACCAAGATACTGCGCAAGCTC
TGGCAGATGGATTGATGGAGTTGTCAAAAGAAGATTCTGAAAGAAATGTTGTAGAAGACAATTCTTGGGA
CACAAAGTCCAGGCTCAGCAAAAATGATTTAAATTTTGAAGCACTGATTAATCTGGAGAGAATACTCCAG
AAGGACTCAGCAGAAAAGCGAGCTAGAGTTGTCAGAGAACTCTTACAGAGTGAGAGAAAATACGTGCAGA
TACTGGAAATTGTGAGAGATGTTTATGTCGCACCACTGAAAGCAGCATTGTCATCAAACAGAGCGATTCT
GAGTGCTGCCAATATCCAGATCATTTTCTGTGACATTCTACAGATTTTAAGTCTCAACAGGCAGTTTCTA
GATAACCTGAGAGACAGACTGCAGGAATGGGGCCCAGCTCACTGTGTGGGAGAAATAGTCACGAAGTTTG
GAAGCCAGTTAAACACATATACCAATTTCTTCAACAATTACCCTGTCATTCTGAAAACTATTGAGAAGTG
CAGAGAAATGATACCAGCATTCCGAACTTTCCTGAAGAGGCATGATAAGACCATTGTTACCAAAATGCTG
AGCCTGCCAGAGCTGCTGCTGTACCCATCCCGAAGATTTGAAGAATACCTTAATCTTCTCTACGCTGTCA
GGCTTCATACCCCTGCAGAGCATGTTGACCGTGGGGACTTGACCACTGCAATTGACCAAATCAAAAAATA
TAAAGGTTATATAGATCAGATGAAGCAAAACATCACTATGAAGGATCATCTGTCAGATATACAGAGAATC
ATCTGGGGATGCCCTACTCTATCAGAAGTAAACAGATATCTGATTAGGGTACAAGATGTAGCCCAACTTC
ATTGCTGTGATGAAGAAATAAGTTTCTCTTTAAGGCTCTATGAACACATCCATGATCTCAGCCTTTTCCT
CTTCAATGATGCCCTGCTCGTTTCTAGTCGGGGCACATCTCACACTCCATTTGAGAGGACTTCAAAAACA
ACCTACCAGTTCATTGCATCAGTGGCCCTTCATCGGTTACTCATAGAAAATATTCCAGATTCCAAGTATG
TCAAGAATGCATTTATTCTTCAGGGTCCAAAATATAAATGGATTTGTGCTACAGAAATAGAGGATGATAA
GTTCCTATGGCTGTCAGTACTTCGAAATGCAATCAAAAGCAGTATGGAGAAGTGA

Translation (904 aa):
MESFHTRFSAWTPFSNKSLNRQLFQERVALISHWFDLWTNKQRQEFLFAIFLRCTKSQLRFVQDWFSERM
QVAKVDFSTVLPRFISLYIFSFLSPKDLCAAAQVSWPWKFLTEQDCLWMPKCVKFGWFLPYTPTDNEYGA
WKRHYIACVSHLDWLTPREAAATYGTLNEPKTEDEELLERQREKCLRKRIWEKIALRKKELFKVRPPWVS
GTCCSSVLKPRCQPRLSQTVRERVGLHEALEKQLVLTSLETLPKRSNISGSHSYPLLSKKNWHGVHKNDD
RSSYALRPHFMLISSRIPAYEMVMESVKAGVVSVVYEHSVTLESLLYLIEKALDGQKAQSIGIFSDGDSR
EINLLQGYKIGVKNLLRPEVRDFWEKLGSYVATEEEGGHVDFFVPLGASEAGIEVLSQLSQLTGTFFTAP
TGIATGSYQHILSDWLGSQWGKAPSSIYFCESKLQTWSSFTDFLEETLKTVRKQLYPFFKELQKSISGRM
IGQFMFDTMGMTNILNNQDTAQALADGLMELSKEDSERNVVEDNSWDTKSRLSKNDLNFEALINLERILQ
KDSAEKRARVVRELLQSERKYVQILEIVRDVYVAPLKAALSSNRAILSAANIQIIFCDILQILSLNRQFL
DNLRDRLQEWGPAHCVGEIVTKFGSQLNTYTNFFNNYPVILKTIEKCREMIPAFRTFLKRHDKTIVTKML
SLPELLLYPSRRFEEYLNLLYAVRLHTPAEHVDRGDLTTAIDQIKKYKGYIDQMKQNITMKDHLSDIQRI
IWGCPTLSEVNRYLIRVQDVAQLHCCDEEISFSLRLYEHIHDLSLFLFNDALLVSSRGTSHTPFERTSKT
TYQFIASVALHRLLIENIPDSKYVKNAFILQGPKYKWICATEIEDDKFLWLSVLRNAIKSSMEK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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