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Report for CCDS43341.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43341.1 Public Homo sapiens 5 FAM81B 24 110 108 CCDS HistoryNCBI Gene:153643Re-query CCDS DB by CCDS ID:43341.1Re-query CCDS DB by GeneID:153643See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43341.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000283357.10 ENSP00000283357.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000283357.10Link to Ensembl Protein Viewer:ENSP00000283357.5Re-query CCDS DB by Nucleotide ID:ENST00000283357Re-query CCDS DB by Protein ID:ENSP00000283357
Original member Current member NCBI NM_152548.3 NP_689761.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152548.3Link to Protein Sequence:NP_689761.2Re-query CCDS DB by Nucleotide ID:NM_152548Re-query CCDS DB by Protein ID:NP_689761Link to BLAST:NP_689761.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_689761.2 452 Q96LP2 452 100% 0 0

Chromosomal Locations for CCDS 43341.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 95391390 95391513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 95392794 95392897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 95396111 95396175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 95413947 95414190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 95420284 95420402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 95428603 95428732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 95436800 95436906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 95446562 95446697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 95448269 95448464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 95450149 95450282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1359 nt):
ATGCAATTACAATTCCTTGGTACATTGGCTTCCTCAGAAAAAAGAAAAAAATCACAGAGATTGTTTTTCA
AAAATATCAAATCTACAAAAAATAAAGCTGGAAAAGCAAGCATCATGAGTTCAGATACAAATGTAAACAA
AAGTGCCTCTCCAACTGCGACTGCAGAGGAACAGCCAGTTGAACCTGATGGCCCCCTTCCTGGCTCAGAC
AATAACCAAGAAAAGAAAGTAAGATTATCTCCAGCCAAAATGTCAACCAAGAATTCTACAGATCTAGTTG
AATATGTTGACAAGAGTCATGCTTTTCTCCCCATCATTCCAAACACCCAGAGAGGTCAGCTAGAAGACAG
ACTGAACAACCAGGCGCGTACCATAGCTTTCCTTCTTGAACAAGCCTTCCGCATCAAGGAGGACATCTCT
GCTTGCCTGCAGGGGACCCATGGCTTTCGAAAAGAGGAATCGCTCGCCAGGAAGTTACTGGAAAGCCACA
TCCAGACCATCACCAGCATCGTCAAAAAACTCAGCCAAAATATTGAGATTTTAGAAGACCAAATAAGAGC
TCGAGATCAGGCGGCCACAGGAACTAACTTTGCAGTACACGAGATAAACATCAAACACCTACAAGGAGTT
GGAGATCTTCGAGGAAGAGTAGCCAGATGTGATTCAAGCATTGTGAAGCTTTCTGGAGACATTCACTTAT
TCAGGCAAGAGCACCGGCAAATTGAGAAAGCCATTCAAGAATTCGTGCCCGCCCTGGAAACTCTTTCCAA
GAACTTGGACATGAAGGTGATGCAGCTCTTAGGAAAGATAGAAACTGCCAGTTCTGAGCAAACCTCGAAT
TTAAAGATGGTCCAGGGGGATTATCGCCACGAAATGAACCTTTTGGAATTCAAATTTCATTCACTTTCAA
GTAATCTGTACGAAGAAGTTGAGAATAATAAAAAATGGACAGAAAACCAATTTCTCAAATATAGAAAAGA
CCACCTGGGCCATATAAATGAATGTCTGAAGGTCCTACAGGAGAAACTGGAAAAGTCTGAAAATAAAATG
GAAGAAAAACTGCTGCAGCTTTCAAGCAAAGTAGAGAATTTCATTAACACACAGAAACAGGAAACACAAC
TAAGTAAAGTAAAGCATATGGAAAATAAATTGTCCAAAAAGATGGAACAAATGGAAAAGCAGATCTGGGG
TGAATTAGAGACAATGCAGAATGAATATCAATCAGGATTTAAATCAATTCATGACTCTCTCAGCTCCCTC
CAACAAATACAGAAAACAAAGATGGATTTAGAGAAATATAAAGTACAGAAAGACCTAAAGAAATTACAGC
GCAAGATAGTGGAACTCCAGGAAGTATAA

Translation (452 aa):
MQLQFLGTLASSEKRKKSQRLFFKNIKSTKNKAGKASIMSSDTNVNKSASPTATAEEQPVEPDGPLPGSD
NNQEKKVRLSPAKMSTKNSTDLVEYVDKSHAFLPIIPNTQRGQLEDRLNNQARTIAFLLEQAFRIKEDIS
ACLQGTHGFRKEESLARKLLESHIQTITSIVKKLSQNIEILEDQIRARDQAATGTNFAVHEINIKHLQGV
GDLRGRVARCDSSIVKLSGDIHLFRQEHRQIEKAIQEFVPALETLSKNLDMKVMQLLGKIETASSEQTSN
LKMVQGDYRHEMNLLEFKFHSLSSNLYEEVENNKKWTENQFLKYRKDHLGHINECLKVLQEKLEKSENKM
EEKLLQLSSKVENFINTQKQETQLSKVKHMENKLSKKMEQMEKQIWGELETMQNEYQSGFKSIHDSLSSL
QQIQKTKMDLEKYKVQKDLKKLQRKIVELQEV


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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