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Report for CCDS42739.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42739.1 Public Homo sapiens 2 C2orf76 24 110 108 CCDS HistoryNCBI Gene:130355Re-query CCDS DB by CCDS ID:42739.1Re-query CCDS DB by GeneID:130355See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42739.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000334816.12 ENSP00000335041.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000334816.12Link to Ensembl Protein Viewer:ENSP00000335041.7Re-query CCDS DB by Nucleotide ID:ENST00000334816Re-query CCDS DB by Protein ID:ENSP00000335041
Original member Current member EBI ENST00000409466.6 ENSP00000386302.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000409466.6Link to Ensembl Protein Viewer:ENSP00000386302.2Re-query CCDS DB by Nucleotide ID:ENST00000409466Re-query CCDS DB by Protein ID:ENSP00000386302
Original member Current member EBI ENST00000409523.1 ENSP00000386714.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000409523.1Link to Ensembl Protein Viewer:ENSP00000386714.1Re-query CCDS DB by Nucleotide ID:ENST00000409523Re-query CCDS DB by Protein ID:ENSP00000386714
Original member Current member EBI ENST00000409877.5 ENSP00000387234.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000409877.5Link to Ensembl Protein Viewer:ENSP00000387234.1Re-query CCDS DB by Nucleotide ID:ENST00000409877Re-query CCDS DB by Protein ID:ENSP00000387234
Original member Current member NCBI NM_001017927.4 NP_001017927.2 Accepted alive Link to Nucleotide Sequence:NM_001017927.4Link to Protein Sequence:NP_001017927.2Re-query CCDS DB by Nucleotide ID:NM_001017927Re-query CCDS DB by Protein ID:NP_001017927Link to BLAST:NP_001017927.2
Original member Current member NCBI NM_001322329.2 NP_001309258.1 Accepted alive Link to Nucleotide Sequence:NM_001322329.2Link to Protein Sequence:NP_001309258.1Re-query CCDS DB by Nucleotide ID:NM_001322329Re-query CCDS DB by Protein ID:NP_001309258Link to BLAST:NP_001309258.1
Original member Current member NCBI NM_001322330.2 NP_001309259.1 Accepted alive Link to Nucleotide Sequence:NM_001322330.2Link to Protein Sequence:NP_001309259.1Re-query CCDS DB by Nucleotide ID:NM_001322330Re-query CCDS DB by Protein ID:NP_001309259Link to BLAST:NP_001309259.1
Original member Current member NCBI NM_001322331.2 NP_001309260.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001322331.2Link to Protein Sequence:NP_001309260.1Re-query CCDS DB by Nucleotide ID:NM_001322331Re-query CCDS DB by Protein ID:NP_001309260Link to BLAST:NP_001309260.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001017927.2 126 Q3KRA6 126 100% 0 0
NP_001309258.1 126 Q3KRA6 126 100% 0 0
NP_001309259.1 126 Q3KRA6 126 100% 0 0
NP_001309260.1 126 Q3KRA6 126 100% 0 0

Chromosomal Locations for CCDS 42739.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 119302472 119302548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119311622 119311703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119317466 119317503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119321154 119321204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119339827 119339959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (381 nt):
ATGGCTCCTGGAGAAGTGACCATCACAGTTCGCCTCATCCGTTCCTTTGAACATCGCAATTTCAAACCTG
TAGTGTATCACGGAGTGAATTTGGACCAAACTGTAAAGGAATTTATCGTATTTCTAAAGCAAGATATCCC
TTTAAGGACCAACCTGCCACCACCATTCAGAAATTATAAATATGATGCACTAAAGATTATTCATCAAGCA
CATAAATCAAAGACAAATGAACTTGTGTTGAGTTTGGAAGATGACGAAAGACTCCTGCTGAAAGAAGACA
GCACTCTGAAAGCAGCTGGAATCGCCAGTGAAACTGAAATTGCATTCTTCTGTGAAGAAGATTATAAGAA
CTACAAAGCTAATCCCATTTCATCCTGGTGA

Translation (126 aa):
MAPGEVTITVRLIRSFEHRNFKPVVYHGVNLDQTVKEFIVFLKQDIPLRTNLPPPFRNYKYDALKIIHQA
HKSKTNELVLSLEDDERLLLKEDSTLKAAGIASETEIAFFCEEDYKNYKANPISSW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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