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Genome Displays Related Resources Gene HomoloGene MANE RefSeq
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Report for CCDS42646.2 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
42646.2 |
Public |
Homo sapiens |
2 |
SH3YL1 |
24 |
110 |
108 |
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Public Note for CCDS 42646.1 |
The coding region has been updated to represent an alternative splicing pattern, resulting in an extended protein N-terminus that is more supported by the available transcript and protein data. |
Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47
Review status: Reviewed (by RefSeq, Havana and CCDS collaboration) Sequence IDs included in CCDS 42646.2
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
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EBI |
ENST00000356150.10 |
ENSP00000348471.5 |
MANE Select |
Accepted |
alive |
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NCBI |
NM_015677.4 |
NP_056492.2 |
MANE Select |
Accepted |
alive |
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RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_056492.2 |
342 |
Q96HL8-1 |
342 |
100% |
0 |
0 |
Chromosomal Locations for CCDS 42646.2
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
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Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (1029 nt): ATGAATAACCCTATACCTTCCAATTTGAAATCAGAAGCAAAAAAGGCTGCCAAAATATTAAGAGAATTCA CAGAAATAACTTCCAGAAATGGACCTGATAAGATCATTCCTGCTCACGTAATTGCGAAGGCTAAAGGCCT TGCAATTCTGTCTGTGATCAAAGCCGGGTTCCTGGTGACTGCCAGAGGAGGCAGCGGGATTGTAGTGGCG CGCCTTCCAGATGGAAAATGGTCTGCACCCTCAGCCATTGGGATAGCTGGCCTTGGTGGAGGATTTGAAA TAGGAATTGAGGTATCAGACTTGGTGATAATTCTGAATTATGACCGTGCTGTAGAAGCTTTTGCAAAAGG CGGAAATCTGACCCTCGGAGGGAACTTGACTGTGGCGGTTGGGCCCTTGGGAAGGAACTTGGAAGGAAAC GTGGCCCTGAGAAGCTCCGCTGCCGTCTTCACGTACTGCAAGTCAAGGGGACTCTTTGCAGGCGTGTCTT TAGAAGGGAGCTGTTTGATTGAAAGGAAAGAAACTAATAGAAAATTTTATTGTCAAGATATCCGAGCTTA TGACATTTTATTTGGAGATACACCGCGGCCTGCTCAAGCCGAAGATCTTTATGAAATTCTTGATTCCTTT ACTGAAAAGTATGAAAATGAAGGACAACGAATCAATGCAAGAAAAGCAGCAAGGGAGCAGAGGAAGTCTT CTGCTAAAGAATTACCTCCAAAGCCATTGTCAAGACCACAGCAGTCATCTGCACCAGTCCAGCTGAACTC TGGCTCTCAAAGTAACAGAAATGAATATAAGCTCTATCCTGGACTTTCCAGCTATCATGAGAGAGTTGGC AATTTGAATCAACCCATAGAAGTGACAGCGCTGTATTCATTTGAAGGACAGCAGCCTGGGGATTTGAATT TTCAAGCTGGAGACAGAATCACAGTTATATCAAAAACAGATTCACATTTTGATTGGTGGGAAGGAAAACT TCGAGGTCAAACTGGCATTTTTCCAGCCAACTACGTAACCATGAATTAA
Translation (342 aa): MNNPIPSNLKSEAKKAAKILREFTEITSRNGPDKIIPAHVIAKAKGLAILSVIKAGFLVTARGGSGIVVA RLPDGKWSAPSAIGIAGLGGGFEIGIEVSDLVIILNYDRAVEAFAKGGNLTLGGNLTVAVGPLGRNLEGN VALRSSAAVFTYCKSRGLFAGVSLEGSCLIERKETNRKFYCQDIRAYDILFGDTPRPAQAEDLYEILDSF TEKYENEGQRINARKAAREQRKSSAKELPPKPLSRPQQSSAPVQLNSGSQSNRNEYKLYPGLSSYHERVG NLNQPIEVTALYSFEGQQPGDLNFQAGDRITVISKTDSHFDWWEGKLRGQTGIFPANYVTMN
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