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Report for CCDS42528.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42528.1 Public Homo sapiens 19 TM6SF2 24 110 108 CCDS HistoryNCBI Gene:53345Re-query CCDS DB by CCDS ID:42528.1Re-query CCDS DB by GeneID:53345See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42528.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000389363.5 ENSP00000374014.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000389363.5Link to Ensembl Protein Viewer:ENSP00000374014.2Re-query CCDS DB by Nucleotide ID:ENST00000389363Re-query CCDS DB by Protein ID:ENSP00000374014
Original member Current member NCBI NM_001001524.3 NP_001001524.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001001524.3Link to Protein Sequence:NP_001001524.2Re-query CCDS DB by Nucleotide ID:NM_001001524Re-query CCDS DB by Protein ID:NP_001001524Link to BLAST:NP_001001524.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001001524.2 377 Q9BZW4-1 377 100% 0 0

Chromosomal Locations for CCDS 42528.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 19264664 19264873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19266490 19266609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19267621 19267713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19267986 19268087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19268630 19268754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19269687 19269769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19270173 19270276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19270345 19270442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19271022 19271125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19273121 19273215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1134 nt):
ATGGACATCCCGCCGCTGGCCGGCAAGATCGCGGCGCTGTCGCTGAGCGCCCTCCCGGTGTCCTACGCGC
TCAACCACGTCTCGGCGCTCTCGCACCCCCTGTGGGTGGCATTGATGAGCGCCCTAATCCTGGGTCTGCT
TTTCGTGGCGGTCTACAGCTTGTCCCATGGCGAGGTCTCCTATGACCCACTCTATGCTGTCTTCGCTGTC
TTCGCCTTCACCTCGGTTGTGGACCTCATCATCGCTCTTCAGGAAGACAGCTATGTGGTGGGCTTCATGG
AGTTCTACACCAAGGAGGGAGAGCCATACCTGCGCACAGCGCACGGAGTCTTCATCTGCTACTGGGATGG
CACTGTTCACTACCTCCTCTACCTGGCCATGGCCGGCGCCATCTGCAGAAGGAAGAGATACCGGAATTTT
GGACTCTACTGGCTGGGTTCCTTCGCCATGAGCATCCTGGTGTTCCTTACAGGAAACATTCTTGGCAAAT
ACAGCTCCGAGATCAGGCCTGCCTTCTTCCTCACCATCCCCTACCTGCTGGTGCCATGCTGGGCTGGCAT
GAAGGTCTTCAGCCAGCCCCGGGCGCTAACCCGCTGCACCGCCAACATGGTGCAAGAGGAACAAAGAAAG
GGACTCCTGCAGCGTCCGGCTGACCTGGCCCTTGTCATATATCTCATCCTTGCTGGCTTCTTCACTCTGT
TCCGGGGCCTGGTGGTGCTTGATTGCCCCACAGATGCCTGCTTTGTCTATATCTACCAGTATGAGCCATA
CCTGCGGGACCCTGTGGCCTACCCTAAGGTGCAGATGCTGATGTACATGTTTTATGTCCTGCCTTTCTGC
GGCCTGGCTGCCTATGCTCTCACCTTCCCTGGTTGCTCCTGGCTTCCAGACTGGGCCTTGGTGTTTGCTG
GAGGCATCGGCCAGGCACAGTTCTCGCACATGGGGGCTTCCATGCACCTGCGCACACCCTTCACCTACCG
TGTGCCTGAGGACACCTGGGGCTGCTTCTTCGTGTGCAATCTGCTGTATGCGCTGGGCCCCCACCTGCTG
GCCTACCGTTGCCTTCAGTGGCCCGCATTCTTCCACCAGCCACCACCCTCCGACCCCCTAGCCCTCCACA
AGAAGCAGCATTGA

Translation (377 aa):
MDIPPLAGKIAALSLSALPVSYALNHVSALSHPLWVALMSALILGLLFVAVYSLSHGEVSYDPLYAVFAV
FAFTSVVDLIIALQEDSYVVGFMEFYTKEGEPYLRTAHGVFICYWDGTVHYLLYLAMAGAICRRKRYRNF
GLYWLGSFAMSILVFLTGNILGKYSSEIRPAFFLTIPYLLVPCWAGMKVFSQPRALTRCTANMVQEEQRK
GLLQRPADLALVIYLILAGFFTLFRGLVVLDCPTDACFVYIYQYEPYLRDPVAYPKVQMLMYMFYVLPFC
GLAAYALTFPGCSWLPDWALVFAGGIGQAQFSHMGASMHLRTPFTYRVPEDTWGCFFVCNLLYALGPHLL
AYRCLQWPAFFHQPPPSDPLALHKKQH


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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