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Report for CCDS42470.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42470.1 Public Homo sapiens 19 MPND 24 110 108 CCDS HistoryNCBI Gene:84954Re-query CCDS DB by CCDS ID:42470.1Re-query CCDS DB by GeneID:84954See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42470.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000262966.12 ENSP00000262966.7 Accepted alive Link to Ensembl Transcript Viewer:ENST00000262966.12Link to Ensembl Protein Viewer:ENSP00000262966.7Re-query CCDS DB by Nucleotide ID:ENST00000262966Re-query CCDS DB by Protein ID:ENSP00000262966
Original member Current member NCBI NM_032868.6 NP_116257.2 Accepted alive Link to Nucleotide Sequence:NM_032868.6Link to Protein Sequence:NP_116257.2Re-query CCDS DB by Nucleotide ID:NM_032868Re-query CCDS DB by Protein ID:NP_116257Link to BLAST:NP_116257.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_116257.2 471 Q8N594-1 471 100% 0 0

Chromosomal Locations for CCDS 42470.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 4343594 4343600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4343708 4343994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4345745 4345981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4352897 4353029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4354045 4354129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4354324 4354420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4354949 4355021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4355097 4355173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4357253 4357421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4357515 4357585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4359163 4359255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4359916 4360002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1416 nt):
ATGGCAGCTCCGGAGCCGCTGTCCCCGGCGGGCGGTGCGGGCGAGGAGGCGCCGGAGGAGGACGAGGACG
AAGCGGAGGCCGAGGACCCTGAGCGGCCGAATGCGGGAGCGGGCGGTGGACGCAGTGGCGGCGGCGGCAG
TAGCGTCAGCGGAGGAGGCGGCGGCGGCGGGGCCGGGGCGGGGGGCTGCGGCGGGCCCGGGGGCGCGCTC
ACCAGGCGCGCGGTCACACTGCGGGTGCTCCTCAAAGACGCGCTGCTGGAGCCTGGCGCCGGGGTGCTGT
CCATCTACTACCTGGGGAAGAAGTTCCTGGGCGACCTGCAGCCAGACGGAAGGATCATGTGGCAGGAGAC
CGGGCAGACCTTCAACTCACCCAGCGCCTGGGCCACCCACTGCAAGAAGCTGGTGAACCCTGCCAAGAAG
TCGGGCTGTGGCTGGGCCTCTGTCAAGTACAAAGGCCAGAAACTGGACAAGTACAAGGCCACCTGGCTCC
GGCTGCACCAGCTGCACACGCCTGCCACGGCTGCTGATGAGAGCCCAGCCAGTGAAGGGGAGGAGGAGGA
GTTGCTGATGGAAGAGGAGGAGGAGGACGTTCTGGCAGGGGTCTCAGCAGAGGACAAGAGTCGGAGACCA
CTGGGGAAGAGCCCTTCAGAGCCTGCCCACCCGGAGGCCACAACCCCAGGGAAGCGGGTGGACAGCAAGA
TCCGGGTTCCGGTCCGCTACTGCATGCTGGGCAGCCGCGACTTGGCCAGGAACCCCCACACCCTGGTGGA
AGTAACATCCTTTGCAGCCATCAACAAGTTCCAGCCGTTCAACGTGGCTGTTTCTAGCAACGTGCTGTTC
CTGCTGGACTTCCACAGTCACCTGACACGGAGTGAGGTCGTGGGTTACCTGGGGGGCCGCTGGGACGTCA
ACAGCCAGATGCTGACGGTGCTCAGAGCCTTCCCTTGTCGGAGCCGGCTCGGGGACGCAGAGACTGCAGC
TGCCATCGAAGAGGAGATCTACCAGAGCCTGTTCCTGCGGGGCCTGTCCCTGGTGGGCTGGTACCACAGC
CACCCACACAGCCCGGCGCTGCCATCTCTGCAGGACATCGACGCACAGATGGACTACCAGCTGCGGCTGC
AGGGCTCCAGCAATGGCTTCCAGCCCTGCCTCGCCCTGCTCTGCTCCCCTTACTATTCTGGCAACCCAGG
CCCCGAGTCCAAGATCTCACCTTTCTGGGTGATGCCTCCTCCCGAGATGCTGCTGGTGGAGTTCTACAAG
GGTTCCCCTGACCTCGTGAGGCTCCAGGAACCCTGGAGCCAGGAGCACACCTACCTCGACAAGCTTAAGA
TCTCCTTGGCCAGCAGGACGCCCAAGGACCAGAGCCTGTGTCACGTCCTGGAACAGGTGTGCGGCGTCCT
CAAGCAGGGGAGCTGA

Translation (471 aa):
MAAPEPLSPAGGAGEEAPEEDEDEAEAEDPERPNAGAGGGRSGGGGSSVSGGGGGGGAGAGGCGGPGGAL
TRRAVTLRVLLKDALLEPGAGVLSIYYLGKKFLGDLQPDGRIMWQETGQTFNSPSAWATHCKKLVNPAKK
SGCGWASVKYKGQKLDKYKATWLRLHQLHTPATAADESPASEGEEEELLMEEEEEDVLAGVSAEDKSRRP
LGKSPSEPAHPEATTPGKRVDSKIRVPVRYCMLGSRDLARNPHTLVEVTSFAAINKFQPFNVAVSSNVLF
LLDFHSHLTRSEVVGYLGGRWDVNSQMLTVLRAFPCRSRLGDAETAAAIEEEIYQSLFLRGLSLVGWYHS
HPHSPALPSLQDIDAQMDYQLRLQGSSNGFQPCLALLCSPYYSGNPGPESKISPFWVMPPPEMLLVEFYK
GSPDLVRLQEPWSQEHTYLDKLKISLASRTPKDQSLCHVLEQVCGVLKQGS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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