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Report for CCDS42467.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42467.1 Public Homo sapiens 19 TBXA2R 24 110 108 CCDS HistoryNCBI Gene:6915Re-query CCDS DB by CCDS ID:42467.1Re-query CCDS DB by GeneID:6915See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42467.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000375190.10 ENSP00000364336.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000375190.10Link to Ensembl Protein Viewer:ENSP00000364336.4Re-query CCDS DB by Nucleotide ID:ENST00000375190Re-query CCDS DB by Protein ID:ENSP00000364336
Original member Current member NCBI NM_001060.6 NP_001051.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001060.6Link to Protein Sequence:NP_001051.1Re-query CCDS DB by Nucleotide ID:NM_001060Re-query CCDS DB by Protein ID:NP_001051Link to BLAST:NP_001051.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001051.1 343 P21731-3 343 100% 0 0

Chromosomal Locations for CCDS 42467.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 3595688 3595933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3599849 3600634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1032 nt):
ATGTGGCCCAACGGCAGTTCCCTGGGGCCCTGTTTCCGGCCCACAAACATTACCCTGGAGGAGAGACGGC
TGATCGCCTCGCCCTGGTTCGCCGCCTCCTTCTGCGTGGTGGGCCTGGCCTCCAACCTGCTGGCCCTGAG
CGTGCTGGCGGGCGCGCGGCAGGGGGGTTCGCACACGCGCTCCTCCTTCCTCACCTTCCTCTGCGGCCTC
GTCCTCACCGACTTCCTGGGGCTGCTGGTGACCGGTACCATCGTGGTGTCCCAGCACGCCGCGCTCTTCG
AGTGGCACGCCGTGGACCCTGGCTGCCGTCTCTGTCGCTTCATGGGCGTCGTCATGATCTTCTTCGGCCT
GTCCCCGCTGCTGCTGGGGGCCGCCATGGCCTCAGAGCGCTACCTGGGTATCACCCGGCCCTTCTCGCGC
CCGGCGGTCGCCTCGCAGCGCCGCGCCTGGGCCACCGTGGGGCTGGTGTGGGCGGCCGCGCTGGCGCTGG
GCCTGCTGCCCCTGCTGGGCGTGGGTCGCTACACCGTGCAATACCCGGGGTCCTGGTGCTTCCTGACGCT
GGGCGCCGAGTCCGGGGACGTGGCCTTCGGGCTGCTCTTCTCCATGCTGGGCGGCCTCTCGGTCGGGCTG
TCCTTCCTGCTGAACACGGTCAGCGTGGCCACCCTGTGCCACGTCTACCACGGGCAGGAGGCGGCCCAGC
AGCGTCCCCGGGACTCCGAGGTGGAGATGATGGCTCAGCTCCTGGGGATCATGGTGGTGGCCAGCGTGTG
TTGGCTGCCCCTTCTGGTCTTCATCGCCCAGACAGTGCTGCGAAACCCGCCTGCCATGAGCCCCGCCGGG
CAGCTGTCCCGCACCACGGAGAAGGAGCTGCTCATCTACTTGCGCGTGGCCACCTGGAACCAGATCCTGG
ACCCCTGGGTGTATATCCTGTTCCGCCGCGCCGTGCTCCGGCGTCTCCAGCCTCGCCTCAGCACCCGGCC
CAGGTCGCTGTCCCTCCAGCCCCAGCTCACGCAGCGCTCCGGGCTGCAGTAG

Translation (343 aa):
MWPNGSSLGPCFRPTNITLEERRLIASPWFAASFCVVGLASNLLALSVLAGARQGGSHTRSSFLTFLCGL
VLTDFLGLLVTGTIVVSQHAALFEWHAVDPGCRLCRFMGVVMIFFGLSPLLLGAAMASERYLGITRPFSR
PAVASQRRAWATVGLVWAAALALGLLPLLGVGRYTVQYPGSWCFLTLGAESGDVAFGLLFSMLGGLSVGL
SFLLNTVSVATLCHVYHGQEAAQQRPRDSEVEMMAQLLGIMVVASVCWLPLLVFIAQTVLRNPPAMSPAG
QLSRTTEKELLIYLRVATWNQILDPWVYILFRRAVLRRLQPRLSTRPRSLSLQPQLTQRSGLQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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