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Report for CCDS4214.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4214.1 Public Homo sapiens 5 DNAJC18 24 110 108 CCDS HistoryNCBI Gene:202052Re-query CCDS DB by CCDS ID:4214.1Re-query CCDS DB by GeneID:202052See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4214.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000302060.10 ENSP00000302843.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000302060.10Link to Ensembl Protein Viewer:ENSP00000302843.5Re-query CCDS DB by Nucleotide ID:ENST00000302060Re-query CCDS DB by Protein ID:ENSP00000302843
Original member Current member NCBI NM_152686.4 NP_689899.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152686.4Link to Protein Sequence:NP_689899.1Re-query CCDS DB by Nucleotide ID:NM_152686Re-query CCDS DB by Protein ID:NP_689899Link to BLAST:NP_689899.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_689899.1 358 Q9H819 358 100% 0 0

Chromosomal Locations for CCDS 4214.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 139414148 139414272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139420053 139420225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139422708 139422817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139425005 139425114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139426172 139426357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139428538 139428683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139437372 139437558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139439406 139439445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1077 nt):
ATGGCGGCGACTCTGGGCAGCGGGGAGCGCTGGACGGAAGCTTACATTGACGCAGTTAGAAGAAACAAAT
ACCCAGAAGACACACCTCCTGAGAGTCATGACCCCTGTGGCTGCTGTAACTGCATGAAGGCACAAAAGGA
AAAGAAGTCTGAGAATGAGTGGACTCAGACCCGGCAGGGTGAGGGGAACTCCACGTATAGTGAGGAACAG
CTGCTTGGGGTACAAAGGATCAAGAAATGCAGAAATTACTATGAAATTCTGGGAGTTTCTCGAGATGCTA
GTGACGAAGAGCTTAAGAAAGCTTACAGAAAACTCGCCCTGAAATTTCACCCTGACAAGAACTGTGCTCC
TGGAGCAACAGATGCTTTCAAAGCAATAGGAAATGCATTTGCAGTCCTGAGCAATCCTGATAAGAGACTT
CGCTATGATGAATACGGAGATGAACAGGTGACTTTCACTGCCCCTCGAGCCAGACCTTATAATTATTACA
GGGATTTTGAAGCTGACATCACTCCAGAAGAGCTGTTCAACGTCTTCTTTGGAGGACATTTTCCTACAGG
AAATATTCATATGTTTTCAAATGTGACAGATGACACTTACTATTACCGTCGACGGCACCGACATGAGAGG
ACACAGACTCAGAAGGAGGAGGAAGAAGAGAAACCTCAGACTACATATTCTGCATTTATTCAGCTACTTC
CAGTTCTTGTGATTGTGATTATATCTGTCATTACTCAGCTGCTGGCTACTAATCCCCCATATAGTCTGTT
CTATAAATCGACCTTGGGCTACACCATTTCTAGAGAAACTCAGAACCTGCAGGTGCCTTACTTTGTGGAT
AAAAACTTTGACAAGGCCTACAGAGGAGCTTCTCTGCATGACTTGGAGAAAACAATAGAGAAGGATTACA
TTGATTATATCCAGACTAGTTGTTGGAAGGAGAAACAACAAAAGTCAGAGCTGACAAATTTGGCAGGATT
ATACAGAGATGAACGATTGAAACAGAAAGCAGAGTCGCTGAAACTTGAAAACTGTGAGAAACTTTCCAAA
CTCATTGGCCTACGCAGAGGTGGCTGA

Translation (358 aa):
MAATLGSGERWTEAYIDAVRRNKYPEDTPPESHDPCGCCNCMKAQKEKKSENEWTQTRQGEGNSTYSEEQ
LLGVQRIKKCRNYYEILGVSRDASDEELKKAYRKLALKFHPDKNCAPGATDAFKAIGNAFAVLSNPDKRL
RYDEYGDEQVTFTAPRARPYNYYRDFEADITPEELFNVFFGGHFPTGNIHMFSNVTDDTYYYRRRHRHER
TQTQKEEEEEKPQTTYSAFIQLLPVLVIVIISVITQLLATNPPYSLFYKSTLGYTISRETQNLQVPYFVD
KNFDKAYRGASLHDLEKTIEKDYIDYIQTSCWKEKQQKSELTNLAGLYRDERLKQKAESLKLENCEKLSK
LIGLRRGG


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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