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Report for CCDS41596.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41596.1 Public Homo sapiens 11 TNNT3 24 110 108 CCDS HistoryNCBI Gene:7140Re-query CCDS DB by CCDS ID:41596.1Re-query CCDS DB by GeneID:7140See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41596.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000381558.6 ENSP00000370970.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000381558.6Link to Ensembl Protein Viewer:ENSP00000370970.1Re-query CCDS DB by Nucleotide ID:ENST00000381558Re-query CCDS DB by Protein ID:ENSP00000370970
Original member Current member EBI ENST00000641787.1 ENSP00000493331.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000641787.1Link to Ensembl Protein Viewer:ENSP00000493331.1Re-query CCDS DB by Nucleotide ID:ENST00000641787Re-query CCDS DB by Protein ID:ENSP00000493331
Original member Current member NCBI NM_001042782.3 NP_001036247.1 Accepted alive Link to Nucleotide Sequence:NM_001042782.3Link to Protein Sequence:NP_001036247.1Re-query CCDS DB by Nucleotide ID:NM_001042782Re-query CCDS DB by Protein ID:NP_001036247Link to BLAST:NP_001036247.1
Original member Current member NCBI NM_001297646.2 NP_001284575.1 Accepted alive Link to Nucleotide Sequence:NM_001297646.2Link to Protein Sequence:NP_001284575.1Re-query CCDS DB by Nucleotide ID:NM_001297646Re-query CCDS DB by Protein ID:NP_001284575Link to BLAST:NP_001284575.1
Original member Current member NCBI NM_001367844.1 NP_001354773.1 Accepted alive Link to Nucleotide Sequence:NM_001367844.1Link to Protein Sequence:NP_001354773.1Re-query CCDS DB by Nucleotide ID:NM_001367844Re-query CCDS DB by Protein ID:NP_001354773Link to BLAST:NP_001354773.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001036247.1 250 P45378-7 250 100% 0 0
NP_001284575.1 250 P45378-7 250 100% 0 0
NP_001354773.1 250 P45378-7 250 100% 0 0

Chromosomal Locations for CCDS 41596.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 1922875 1922891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 1923048 1923061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 1923555 1923572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 1925099 1925116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 1926695 1926709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 1929810 1929828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 1932469 1932514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 1933721 1933837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 1933931 1934008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 1934332 1934445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 1934546 1934655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 1934829 1934919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 1936963 1937003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 1938438 1938492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (753 nt):
ATGTCTGACGAGGAAGTTGAACAGGTGGAGGAGCAGTACGAAGAAGAAGAGGAAGCCCAGGAGGAAGAGG
AAGTTCAAGAAGAGGAGAAACCGAGACCCAAACTCACTGCTCCTAAGATCCCAGAAGGGGAGAAAGTGGA
CTTCGATGACATCCAGAAGAAGCGTCAGAACAAAGACCTAATGGAGCTCCAGGCCCTCATCGACAGCCAC
TTTGAAGCCCGGAAGAAGGAGGAGGAGGAGCTGGTCGCTCTCAAAGAGAGAATCGAGAAGCGCCGTGCAG
AGAGAGCGGAGCAGCAGAGGATTCGTGCAGAGAAGGAGAGGGAGCGCCAGAACAGACTGGCGGAGGAAAA
GGCCAGAAGGGAGGAGGAGGATGCCAAGAGGAGGGCAGAGGACGACCTGAAGAAGAAGAAAGCTCTGTCT
TCCATGGGAGCCAACTACAGCAGCTACCTGGCCAAGGCTGACCAGAAGAGAGGCAAGAAGCAGACAGCCC
GGGAAATGAAGAAGAAGATTCTGGCTGAGAGACGCAAGCCGCTCAACATCGATCACCTTGGTGAAGACAA
ACTGAGGGACAAGGCCAAGGAGCTCTGGGAGACCCTGCACCAGCTGGAGATTGACAAGTTCGAGTTTGGG
GAGAAGCTGAAACGCCAGAAATATGACATCACCACGCTCAGGAGCCGCATTGACCAGGCCCAGAAGCACA
GCAAGAAGGCTGGGACCCCAGCCAAGGGCAAAGTCGGCGGGCGCTGGAAGTAG

Translation (250 aa):
MSDEEVEQVEEQYEEEEEAQEEEEVQEEEKPRPKLTAPKIPEGEKVDFDDIQKKRQNKDLMELQALIDSH
FEARKKEEEELVALKERIEKRRAERAEQQRIRAEKERERQNRLAEEKARREEEDAKRRAEDDLKKKKALS
SMGANYSSYLAKADQKRGKKQTAREMKKKILAERRKPLNIDHLGEDKLRDKAKELWETLHQLEIDKFEFG
EKLKRQKYDITTLRSRIDQAQKHSKKAGTPAKGKVGGRWK


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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