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Report for CCDS41292.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41292.1 Public Homo sapiens 1 DNAJC8 24 110 108 CCDS HistoryNCBI Gene:22826Re-query CCDS DB by CCDS ID:41292.1Re-query CCDS DB by GeneID:22826See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41292.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000263697.6 ENSP00000263697.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000263697.6Link to Ensembl Protein Viewer:ENSP00000263697.4Re-query CCDS DB by Nucleotide ID:ENST00000263697Re-query CCDS DB by Protein ID:ENSP00000263697
Original member Current member NCBI NM_014280.3 NP_055095.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014280.3Link to Protein Sequence:NP_055095.2Re-query CCDS DB by Nucleotide ID:NM_014280Re-query CCDS DB by Protein ID:NP_055095Link to BLAST:NP_055095.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055095.2 253 O75937 253 100% 0 0

Chromosomal Locations for CCDS 41292.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 28201248 28201370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 28203747 28203822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 28205258 28205349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 28208342 28208413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 28209972 28210066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 28210571 28210637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 28214940 28214996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 28228922 28229023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 28232921 28232998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (762 nt):
ATGGCGGCTTCAGGAGAGAGCGGGACTTCAGGCGGCGGAGGCAGCACCGAGGAAGCATTTATGACCTTCT
ACAGTGAGGTGAAACAAATAGAGAAGAGAGACTCGGTTCTAACTTCGAAAAATCAGATTGAAAGACTGAC
CCGTCCTGGTTCCTCTTACTTCAATTTGAACCCATTTGAGGTTCTTCAGATAGATCCTGAAGTTACAGAT
GAAGAAATAAAAAAGAGGTTTCGGCAGTTATCCATCTTGGTGCATCCTGACAAAAATCAAGATGATGCTG
ACAGAGCACAAAAGGCTTTTGAAGCTGTGGACAAAGCTTACAAGTTGCTACTGGATCAGGAGCAAAAGAA
GAGGGCCCTGGATGTAATTCAGGCAGGAAAAGAATACGTGGAACACACTGTGAAAGAGCGAAAAAAACAA
TTAAAGAAGGAAGGAAAACCTACAATTGTAGAGGAGGATGATCCTGAGCTGTTCAAACAAGCTGTATATA
AACAGACAATGAAACTCTTTGCAGAGCTGGAAATTAAAAGGAAAGAGAGAGAAGCCAAAGAGATGCATGA
AAGGAAACGACAAAGGGAAGAAGAGATTGAAGCTCAAGAAAAAGCCAAACGGGAAAGAGAGTGGCAGAAA
AACTTTGAGGAAAGTCGAGATGGTCGTGTGGACAGCTGGCGAAACTTCCAAGCCAATACGAAGGGGAAGA
AAGAGAAGAAAAATCGGACCTTCCTGAGACCACCGAAAGTAAAAATGGAGCAACGTGAGTGA

Translation (253 aa):
MAASGESGTSGGGGSTEEAFMTFYSEVKQIEKRDSVLTSKNQIERLTRPGSSYFNLNPFEVLQIDPEVTD
EEIKKRFRQLSILVHPDKNQDDADRAQKAFEAVDKAYKLLLDQEQKKRALDVIQAGKEYVEHTVKERKKQ
LKKEGKPTIVEEDDPELFKQAVYKQTMKLFAELEIKRKEREAKEMHERKRQREEEIEAQEKAKREREWQK
NFEESRDGRVDSWRNFQANTKGKKEKKNRTFLRPPKVKMEQRE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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