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Report for CCDS3820.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3820.1 Public Homo sapiens 4 FBXO8 24 110 108 CCDS HistoryNCBI Gene:26269Re-query CCDS DB by CCDS ID:3820.1Re-query CCDS DB by GeneID:26269See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3820.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000393674.7 ENSP00000377280.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000393674.7Link to Ensembl Protein Viewer:ENSP00000377280.2Re-query CCDS DB by Nucleotide ID:ENST00000393674Re-query CCDS DB by Protein ID:ENSP00000377280
Original member Current member NCBI NM_012180.3 NP_036312.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_012180.3Link to Protein Sequence:NP_036312.2Re-query CCDS DB by Nucleotide ID:NM_012180Re-query CCDS DB by Protein ID:NP_036312Link to BLAST:NP_036312.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036312.2 319 Q9NRD0-1 319 100% 0 0

Chromosomal Locations for CCDS 3820.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 174237412 174237599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 174238994 174239190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 174241100 174241218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 174259699 174259825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 174262764 174263092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (960 nt):
ATGGGTCAAGGGTTGTGGAGAGTGGTCAGAAACCAGCAGCTGCAACAAGAAGGCTACAGTGAGCAAGGCT
ACCTCACCAGAGAGCAGAGCAGGAGAATGGCTGCGAGCAACATTTCTAACACCAATCATCGTAAACAAGT
CCAAGGAGGCATTGACATATATCATCTTTTGAAGGCAAGGAAATCGAAAGAACAGGAAGGATTCATTAAT
TTGGAAATGTTGCCTCCTGAGCTAAGCTTTACCATCTTGTCCTACCTGAATGCAACTGACCTTTGCTTGG
CTTCATGTGTTTGGCAGGACCTTGCGAATGATGAACTTCTCTGGCAAGGGTTGTGCAAATCCACTTGGGG
TCACTGTTCCATATACAATAAGAACCCACCTTTAGGATTTTCTTTTAGAAAATTGTATATGCAGCTGGAT
GAAGGCAGCCTCACCTTTAATGCCAACCCAGATGAGGGAGTGAACTACTTTATGTCCAAGGGTATCCTGG
ATGATTCGCCAAAGGAAATAGCAAAGTTTATCTTCTGTACAAGAACACTAAATTGGAAAAAACTGAGAAT
CTATCTTGATGAAAGGAGAGATGTCTTGGATGACCTTGTAACATTGCATAATTTTAGAAATCAGTTCTTG
CCAAATGCACTGAGAGAATTTTTTCGTCATATCCATGCCCCTGAAGAGCGTGGAGAGTATCTTGAAACTC
TTATAACAAAGTTCTCACATAGATTCTGTGCTTGCAACCCTGATTTAATGCGAGAACTTGGCCTTAGTCC
TGATGCTGTCTATGTACTGTGCTACTCTTTGATTCTACTTTCCATTGACCTCACTAGCCCTCATGTGAAG
AATAAAATGTCAAAAAGGGAATTTATTCGAAATACCCGTCGCGCTGCTCAAAATATTAGTGAAGATTTTG
TAGGGCATCTTTATGACAATATCTACCTTATTGGCCATGTGGCTGCATAA

Translation (319 aa):
MGQGLWRVVRNQQLQQEGYSEQGYLTREQSRRMAASNISNTNHRKQVQGGIDIYHLLKARKSKEQEGFIN
LEMLPPELSFTILSYLNATDLCLASCVWQDLANDELLWQGLCKSTWGHCSIYNKNPPLGFSFRKLYMQLD
EGSLTFNANPDEGVNYFMSKGILDDSPKEIAKFIFCTRTLNWKKLRIYLDERRDVLDDLVTLHNFRNQFL
PNALREFFRHIHAPEERGEYLETLITKFSHRFCACNPDLMRELGLSPDAVYVLCYSLILLSIDLTSPHVK
NKMSKREFIRNTRRAAQNISEDFVGHLYDNIYLIGHVAA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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