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Report for CCDS35277.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35277.1 Public Homo sapiens X SHROOM4 24 110 108 CCDS HistoryNCBI Gene:57477Re-query CCDS DB by CCDS ID:35277.1Re-query CCDS DB by GeneID:57477See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35277.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000289292.11 ENSP00000289292.7 Accepted alive Link to Ensembl Transcript Viewer:ENST00000289292.11Link to Ensembl Protein Viewer:ENSP00000289292.7Re-query CCDS DB by Nucleotide ID:ENST00000289292Re-query CCDS DB by Protein ID:ENSP00000289292
Original member Current member EBI ENST00000376020.9 ENSP00000365188.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000376020.9Link to Ensembl Protein Viewer:ENSP00000365188.2Re-query CCDS DB by Nucleotide ID:ENST00000376020Re-query CCDS DB by Protein ID:ENSP00000365188
Original member Current member NCBI NM_020717.5 NP_065768.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020717.5Link to Protein Sequence:NP_065768.2Re-query CCDS DB by Nucleotide ID:NM_020717Re-query CCDS DB by Protein ID:NP_065768Link to BLAST:NP_065768.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065768.2 1493 Q9ULL8-1 1493 100% 0 0

Chromosomal Locations for CCDS 35277.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 50596695 50596964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 50598266 50598535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 50602633 50602813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 50607381 50608184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 50627614 50627675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 50633178 50635668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 50638174 50638308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 50695786 50695937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 50813902 50814018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4482 nt):
ATGGAGAACCGGCCTGGGTCCTTCCAGTACGTCCCTGTGCAGCTGCAAGGGGGGGCACCCTGGGGCTTCA
CCCTTAAGGGGGGTCTGGAACACTGTGAGCCGCTCACAGTGTCTAAGATTGAAGATGGAGGCAAGGCAGC
TTTGTCCCAGAAGATGAGGACTGGTGATGAGCTGGTGAATATCAATGGCACTCCATTATATGGCTCCCGC
CAAGAGGCCCTCATTCTCATCAAAGGCTCCTTCCGGATTCTCAAGCTGATTGTCAGGAGGAGGAACGCCC
CTGTCAGTAGGCCGCACTCATGGCATGTGGCCAAGCTGCTGGAGGGATGCCCTGAAGCAGCCACCACCAT
GCATTTCCCTTCTGAAGCCTTCAGCTTGTCCTGGCATTCTGGCTGCAACACAAGTGACGTGTGTGTGCAG
TGGTGTCCACTCTCCCGGCATTGCAGCACCGAGAAAAGCAGCTCCATTGGCAGCATGGAGAGCCTGGAGC
AACCAGGCCAAGCCACCTATGAGAGCCATCTGTTGCCTATTGACCAGAACATGTACCCTAACCAGCGTGA
CTCAGCCTACAGCTCCTTCTCGGCCAGCTCAAATGCTTCTGACTGTGCCCTTTCCCTCAGGCCAGAGGAG
CCAGCCTCTACAGACTGCATCATGCAAGGCCCAGGGCCAACTAAGGCCCCCAGTGGCCGGCCTAATGTGG
CTGAGACCTCAGGAGGTAGTCGGCGCACCAATGGGGGCCACCTGACCCCCAGCTCTCAGATGTCATCCCG
TCCACAGGAGGGATACCAGTCAGGGCCCGCCAAAGCAGTCAGGGGCCCACCACAACCTCCAGTGAGGCGG
GACAGCCTTCAGGCCTCCAGAGCCCAACTCCTCAATGGAGAGCAGCGCAGGGCATCTGAGCCTGTGGTCC
CCTTGCCACAGAAGGAGAAACTGAGCTTAGAGCCTGTGCTACCCGCAAGGAACCCTAATAGGTTCTGTTG
CCTCAGTGGGCATGACCAAGTGACAAGTGAGGGCCATCAGAACTGTGAGTTCAGTCAGCCTCCTGAATCC
AGCCAACAGGGCTCTGAGCATCTACTGATGCAGGCCTCAACCAAAGCTGTTGGATCCCCAAAAGCCTGTG
ACAGAGCTTCCAGCGTGGATTCCAACCCACTCAATGAGGCTTCTGCAGAGCTAGCTAAGGCTTCTTTTGG
CAGACCTCCACATCTCATAGGACCCACAGGGCATCGCCATAGTGCCCCTGAACAGCTGCTGGCATCCCAC
CTGCAGCATGTGCACCTTGATACCAGGGGCAGCAAAGGGATGGAGCTCCCACCCGTACAGGATGGGCACC
AGTGGACTCTGTCCCCTTTGCACAGCAGCCACAAAGGGAAGAAAAGTCCATGCCCCCCTACAGGAGGAAC
CCATGACCAGTCCAGCAAAGAAAGAAAGACCAGACAAGTGGATGACAGGTCTTTAGTTTTGGGACACCAG
AGCCAAAGCAGTCCCCCACATGGAGAGGCTGATGGACACCCCTCAGAAAAAGGTTTCCTGGACCCAAACA
GAACAAGCAGAGCAGCCAGTGAATTGGCCAACCAGCAACCCTCTGCCTCTGGCTCCCTTGTTCAACAAGC
CACGGACTGTTCTTCAACCACTAAAGCAGCTAGTGGCACAGAGGCAGGTGAAGAAGGGGACAGCGAGCCC
AAGGAGTGCAGCCGGATGGGTGGTAGGCGAAGTGGAGGGACCCGGGGCCGCTCGATCCAAAACCGGCGGA
AGAGTGAGCGTTTTGCTACCAATCTGCGTAATGAAATTCAGAGGAGGAAGGCCCAGCTCCAGAAAAGCAA
GGGTCCCTTGTCACAGCTGTGTGACACTAAGGAGCCAGTGGAAGAGACCCAGGAGCCCCCAGAAAGTCCT
CCACTCACTGCCTCTAACACATCTCTTCTATCTTCATGTAAAAAACCTCCCAGCCCCAGAGACAAGCTCT
TCAACAAAAGCATGATGCTCAGAGCTAGGTCTTCCGAGTGCCTCAGCCAAGCCCCTGAGAGCCATGAATC
TAGGACAGGCTTAGAGGGACGAATAAGCCCTGGCCAGAGGCCTGGCCAGTCCTCTTTGGGCCTGAACACC
TGGTGGAAAGCACCTGACCCATCCTCCTCAGACCCTGAGAAAGCACATGCTCACTGTGGAGTCCGTGGAG
GTCATTGGAGATGGTCTCCAGAGCATAATTCACAGCCACTTGTGGCAGCAGCCATGGAAGGCCCTTCCAA
CCCAGGTGACAACAAGGAATTGAAGGCTTCTACTGCTCAAGCTGGGGAGGATGCCATCCTCTTGCCTTTT
GCAGACAGAAGAAAGTTCTTTGAAGAGAGTAGCAAATCCTTATCTACATCTCATTTGCCAGGTTTAACCA
CTCATAGCAACAAGACTTTTACCCAGAGACCAAAACCTATAGACCAAAACTTCCAGCCAATGAGCTCCAG
CTGTAGGGAATTGAGGCGCCATCCCATGGACCAATCATATCATTCCGCAGACCAACCATATCATGCCACA
GACCAATCATATCATTCCATGTCACCCCTTCAGTCAGAAACTCCCACTTACTCAGAATGTTTTGCAAGCA
AAGGTCTAGAAAATTCCATGTGTTGTAAGCCACTACACTGTGGTGATTTTGATTACCACAGGACCTGCTC
TTACTCCTGCAGTGTTCAAGGAGCTCTAGTCCATGATCCTTGCATTTATTGTTCTGGGGAAATCTGCCCT
GCCTTGCTAAAGAGAAATATGATGCCAAATTGCTACAACTGCCGGTGCCACCACCACCAATGCATTCGGT
GTTCAGTTTGCTATCATAATCCTCAGCACAGTGCCCTCGAGGACAGCAGCTTGGCACCTGGCAACACTTG
GAAACCCAGGAAGCTGACAGTGCAGGAATTTCCTGGGGACAAATGGAATCCAATAACAGGAAACAGGAAG
ACCAGCCAGTCAGGGAGGGAAATGGCTCATTCCAAGACTAGCTTTTCATGGGCAACCCCTTTCCATCCTT
GCCTTGAGAACCCAGCACTGGACTTGTCAAGCTACCGAGCAATTTCTTCTCTTGACCTCCTTGGAGACTT
CAAACATGCTTTGAAAAAATCAGAGGAAACTTCAGTTTATGAGGAGGGGAGCTCCCTTGCCTCCATGCCC
CACCCACTGCGCAGCCGTGCCTTCTCAGAGAGTCACATCAGCTTGGCGCCCCAAAGCACCCGGGCCTGGG
GGCAGCATAGGAGGGAGCTCTTTAGCAAAGGTGATGAGACCCAGTCGGATCTTCTCGGAGCCAGGAAGAA
GGCCTTTCCTCCTCCTCGCCCTCCTCCTCCCAACTGGGAGAAGTACAGGCTCTTTCGTGCAGCCCAGCAG
CAGAAGCAGCAACAGCAGCAGCAGAAGCAACAGGAGGAGGAGGAGGAGGAGGAAGAAGAAGAAGAAGAGG
AAGAGGAAGAGGAGGAGGAGGAGGCAGAGGAGGAGGAAGAGGAGCTGCCACCCCAGTATTTCAGTTCAGA
AACCTCTGGTTCCTGTGCTCTCAATCCTGAGGAGGTCCTAGAGCAGCCACAACCCCTCAGCTTTGGCCAC
CTGGAGGGCTCGAGACAGGGTTCACAAAGTGTCCCAGCAGAGCAAGAATCCTTTGCACTCCATTCCAGTG
ATTTCTTGCCTCCAATAAGGGGTCACTTGGGATCTCAACCTGAGCAGGCTCAGCCCCCTTGCTACTATGG
CATTGGTGGGCTTTGGAGGACATCGGGACAGGAAGCCACTGAATCCGCCAAACAAGAGTTTCAGCACTTT
TCGCCTCCTTCAGGGGCCCCAGGAATCCCTACCTCTTACTCAGCTTATTACAATATTTCTGTGGCCAAGG
CAGAGCTGCTGAACAAACTGAAAGACCAACCTGAGATGGCAGAGATTGGCCTAGGAGAGGAGGAAGTTGA
CCATGAACTGGCTCAAAAAAAGATACAGCTTATCGAAAGCATCAGCAGAAAACTTTCTGTCTTGCGGGAG
GCCCAGCGAGGGCTGCTAGAGGACATCAATGCCAATTCTGCCCTTGGGGAGGAGGTGGAGGCCAACTTAA
AAGCCGTCTGCAAATCCAATGAATTTGAAAAGTACCACTTGTTTGTTGGGGACCTGGACAAAGTGGTCAA
CCTGTTGCTGTCACTCTCTGGACGACTGGCCCGGGTGGAGAATGCTCTGAACAGCATCGATTCAGAGGCC
AACCAGGAGAAGTTGGTACTGATAGAGAAGAAGCAGCAGCTGACGGGGCAGTTGGCAGATGCCAAGGAGC
TGAAGGAGCACGTGGACCGCCGGGAGAAGTTGGTGTTTGGCATGGTCTCCCGCTACCTGCCTCAGGACCA
GCTCCAAGATTACCAGCACTTTGTCAAGATGAAATCTGCTCTCATCATTGAACAGCGAGAGCTGGAGGAG
AAGATCAAGCTCGGGGAAGAGCAACTCAAATGTCTCAGGGAGAGTCTACTCCTGGGGCCCAGCAATTTCT
AA

Translation (1493 aa):
MENRPGSFQYVPVQLQGGAPWGFTLKGGLEHCEPLTVSKIEDGGKAALSQKMRTGDELVNINGTPLYGSR
QEALILIKGSFRILKLIVRRRNAPVSRPHSWHVAKLLEGCPEAATTMHFPSEAFSLSWHSGCNTSDVCVQ
WCPLSRHCSTEKSSSIGSMESLEQPGQATYESHLLPIDQNMYPNQRDSAYSSFSASSNASDCALSLRPEE
PASTDCIMQGPGPTKAPSGRPNVAETSGGSRRTNGGHLTPSSQMSSRPQEGYQSGPAKAVRGPPQPPVRR
DSLQASRAQLLNGEQRRASEPVVPLPQKEKLSLEPVLPARNPNRFCCLSGHDQVTSEGHQNCEFSQPPES
SQQGSEHLLMQASTKAVGSPKACDRASSVDSNPLNEASAELAKASFGRPPHLIGPTGHRHSAPEQLLASH
LQHVHLDTRGSKGMELPPVQDGHQWTLSPLHSSHKGKKSPCPPTGGTHDQSSKERKTRQVDDRSLVLGHQ
SQSSPPHGEADGHPSEKGFLDPNRTSRAASELANQQPSASGSLVQQATDCSSTTKAASGTEAGEEGDSEP
KECSRMGGRRSGGTRGRSIQNRRKSERFATNLRNEIQRRKAQLQKSKGPLSQLCDTKEPVEETQEPPESP
PLTASNTSLLSSCKKPPSPRDKLFNKSMMLRARSSECLSQAPESHESRTGLEGRISPGQRPGQSSLGLNT
WWKAPDPSSSDPEKAHAHCGVRGGHWRWSPEHNSQPLVAAAMEGPSNPGDNKELKASTAQAGEDAILLPF
ADRRKFFEESSKSLSTSHLPGLTTHSNKTFTQRPKPIDQNFQPMSSSCRELRRHPMDQSYHSADQPYHAT
DQSYHSMSPLQSETPTYSECFASKGLENSMCCKPLHCGDFDYHRTCSYSCSVQGALVHDPCIYCSGEICP
ALLKRNMMPNCYNCRCHHHQCIRCSVCYHNPQHSALEDSSLAPGNTWKPRKLTVQEFPGDKWNPITGNRK
TSQSGREMAHSKTSFSWATPFHPCLENPALDLSSYRAISSLDLLGDFKHALKKSEETSVYEEGSSLASMP
HPLRSRAFSESHISLAPQSTRAWGQHRRELFSKGDETQSDLLGARKKAFPPPRPPPPNWEKYRLFRAAQQ
QKQQQQQQKQQEEEEEEEEEEEEEEEEEEEEAEEEEEELPPQYFSSETSGSCALNPEEVLEQPQPLSFGH
LEGSRQGSQSVPAEQESFALHSSDFLPPIRGHLGSQPEQAQPPCYYGIGGLWRTSGQEATESAKQEFQHF
SPPSGAPGIPTSYSAYYNISVAKAELLNKLKDQPEMAEIGLGEEEVDHELAQKKIQLIESISRKLSVLRE
AQRGLLEDINANSALGEEVEANLKAVCKSNEFEKYHLFVGDLDKVVNLLLSLSGRLARVENALNSIDSEA
NQEKLVLIEKKQQLTGQLADAKELKEHVDRREKLVFGMVSRYLPQDQLQDYQHFVKMKSALIIEQRELEE
KIKLGEEQLKCLRESLLLGPSNF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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