NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS34357.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34357.1 Public Homo sapiens 6 ZNF311 24 110 108 CCDS HistoryNCBI Gene:282890Re-query CCDS DB by CCDS ID:34357.1Re-query CCDS DB by GeneID:282890See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34357.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000377179.4 ENSP00000366384.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000377179.4Link to Ensembl Protein Viewer:ENSP00000366384.3Re-query CCDS DB by Nucleotide ID:ENST00000377179Re-query CCDS DB by Protein ID:ENSP00000366384
Original member Current member NCBI NM_001010877.5 NP_001010877.2 Accepted alive Link to Nucleotide Sequence:NM_001010877.5Link to Protein Sequence:NP_001010877.2Re-query CCDS DB by Nucleotide ID:NM_001010877Re-query CCDS DB by Protein ID:NP_001010877Link to BLAST:NP_001010877.2
Original member Current member NCBI NM_001382360.1 NP_001369289.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001382360.1Link to Protein Sequence:NP_001369289.1Re-query CCDS DB by Nucleotide ID:NM_001382360Re-query CCDS DB by Protein ID:NP_001369289Link to BLAST:NP_001369289.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001010877.2 666 Q5JNZ3 666 100% 0 0
NP_001369289.1 666 Q5JNZ3 666 100% 0 0

Chromosomal Locations for CCDS 34357.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 28995001 28996586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 28998734 28998838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 28999487 28999613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 28999956 29000047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29003513 29003594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29003946 29003954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2001 nt):
ATGCAGGAGGTTGTGCTGTTGGATGAGAGTTCAGGACCACCAAGCCAGCTGCTTTGGACCCGCCAGGATA
CCCAGCTCCCTCAGGAAAGCGCTCTATTACCTGCTCCATATCCTGCCTTCACTAAAGATGGAAGCCAAGG
AAACCTGCCGCAAGCAGATATCACACTAATGAGCCAGGCCCAAGAGTCAGTGACATTTGAGGATGTAGCT
GTGAACTTCACTAACAGGGAGTGGCAGTGTCTGACCTACGCTCAAAGGCATCTCTATAAGGATGTGATGT
TGGAAAATTATGGGAACATGGTATCACTTGGATTTCCATTTCCTAAACCTCCTTTAATCTCTCATCTGGA
GCGAGAAGTAGACCCCTGTGTGCAGGATCCACAGGACAGGGAGTCCCTAAGCTGCTCCTACCCAGTGTCA
GCTGACAAGATGTGGCCTGAGAATGAAAAGGCAAGTTCACAACAAGAGATTTTTGAAAATGGAGAAGCCT
ACTGGATGAAATTTAACAGTCTCCTAAAAGTTGATTCCCGGGATCCTAAGGTTAGAGAAGTTTGTGTTCA
GGATGTCAAATTAGAGAATCAATGGGAAACATCTATAAGGGAGAAACTGAGAGAAGAGAAAGAAGGCTCT
GAGGAAGTGACCTGCAAAAAAGGAAAGAACCAGAAAGTGCTTAGTAAAAACTTGAATCCAAACTCAAAAC
ATAGTCAATGTAATAAAGTTCTTATAGCACAGAAACTCCATGAATGTGCCAGGTGTGGCAAAAACTTCAG
TTGGCACTCAGATCTAATTCTCCATGAGCAAATTCATTCTGGTGAGAAACCCCATGTGTGTAATGAGTGT
GGGAAAGCATTCAAGACCAGAAATCAGCTTTCTATGCACCGGATAATCCACACAGGGGAGAAACCTTTTA
ATTGCACCCAGTGTGGGAAGGCTTTCAACAGTAGATCAGCTCTTTGCCGACATAAAAAAACCCACAGTGG
GGAGAAGCCTCACGAGTGCAGGGACTGTGGGAAGGCCTTCAAGACCAGGAACCGTCTCTGTATGCATCAG
CTTATCCACACCGGGGAGAAGCCTTACAAATGTAACTGCTGTGGGAAGGCCTTCCAGTTTAAGCATTCCC
TTACCATCCATGGCAGAATCCACACTGGGGAGAAGCCATATGAATGTGAGGAGTGCGGGAAGGCCTTCAG
TGGGAGTTCAGACCTCACCAAACACATAAGAATCCACACTGGGGAACGACCTTATGAGTGCAGCAAGTGT
GGAAGGGCCTTCAGTCGGAGCTCAGACCTAAGCAAACACAAACGAATCCATACTCGGGAGAAACACTATG
GGTGTCCCCAGTGTGGAAAAGACTTCAGCATCAAGGCAGAACTCACCAAACACAGAAGGATCCACACTGA
AGAGAAACGTTACAGGTGTGAGGAGTGTGGGAAAGCCTTTCGTCATAACTGTAAGCGCAGGGCTCATGAA
CGAGAGCATACAGGGGAGAAGCCCTATCAATGCAGGGATTGTGGGAAAACCTTCCAAGATAAGCACTGCC
TTACCATCCATCAGAGAATCCACACTGGAGAGAAACCTTACAAATGTTTAGAGTGTGGGAAAGCTTTCAG
TGGGAAGTCAAACTTGACCAATCATCGAAGAATTCACACTGGAGAGAAGCCTCACAAATGTGAGGTATGT
GGAATGGCCTTCCATCATAGTTCAGTCCTGAGGCAGCACAAAAGAATCCACACTGGTGAGAAGCCATACA
CCTGCAGTGAGTGTGGCACGTCCTTCCGTCAGGGCTCAGCTCTGATTGGACATAAGCGAGTTCATACTGG
GGAGAAACCTTATGAATGTGAGGAATGTGGAAAAGCTTTTAGAGTGAGCTCAAATCTTACTGGACATAAG
AAAAGAAAACATCAAGTATGGAGTACCCATGAACTTGATGGGAGTAGGAAATCCCTCTCTCCAGTGACTG
TTTCTCAGACCTCAGTAGTCAGTATTTTGACCAGTGCCTGA

Translation (666 aa):
MQEVVLLDESSGPPSQLLWTRQDTQLPQESALLPAPYPAFTKDGSQGNLPQADITLMSQAQESVTFEDVA
VNFTNREWQCLTYAQRHLYKDVMLENYGNMVSLGFPFPKPPLISHLEREVDPCVQDPQDRESLSCSYPVS
ADKMWPENEKASSQQEIFENGEAYWMKFNSLLKVDSRDPKVREVCVQDVKLENQWETSIREKLREEKEGS
EEVTCKKGKNQKVLSKNLNPNSKHSQCNKVLIAQKLHECARCGKNFSWHSDLILHEQIHSGEKPHVCNEC
GKAFKTRNQLSMHRIIHTGEKPFNCTQCGKAFNSRSALCRHKKTHSGEKPHECRDCGKAFKTRNRLCMHQ
LIHTGEKPYKCNCCGKAFQFKHSLTIHGRIHTGEKPYECEECGKAFSGSSDLTKHIRIHTGERPYECSKC
GRAFSRSSDLSKHKRIHTREKHYGCPQCGKDFSIKAELTKHRRIHTEEKRYRCEECGKAFRHNCKRRAHE
REHTGEKPYQCRDCGKTFQDKHCLTIHQRIHTGEKPYKCLECGKAFSGKSNLTNHRRIHTGEKPHKCEVC
GMAFHHSSVLRQHKRIHTGEKPYTCSECGTSFRQGSALIGHKRVHTGEKPYECEECGKAFRVSSNLTGHK
KRKHQVWSTHELDGSRKSLSPVTVSQTSVVSILTSA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH