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Report for CCDS34223.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34223.1 Public Homo sapiens 5 CHSY3 24 110 108 CCDS HistoryNCBI Gene:337876Re-query CCDS DB by CCDS ID:34223.1Re-query CCDS DB by GeneID:337876See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34223.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000305031.5 ENSP00000302629.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000305031.5Link to Ensembl Protein Viewer:ENSP00000302629.4Re-query CCDS DB by Nucleotide ID:ENST00000305031Re-query CCDS DB by Protein ID:ENSP00000302629
Original member Current member NCBI NM_175856.5 NP_787052.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_175856.5Link to Protein Sequence:NP_787052.3Re-query CCDS DB by Nucleotide ID:NM_175856Re-query CCDS DB by Protein ID:NP_787052Link to BLAST:NP_787052.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_787052.3 882 Q70JA7 882 100% 0 0

Chromosomal Locations for CCDS 34223.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 129904830 129905631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 129908077 129908360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 130184229 130185791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2649 nt):
ATGGCTGTGCGCTCTCGCCGCCCGTGGATGAGCGTGGCATTAGGGCTGGTGCTGGGCTTCACCGCCGCGT
CCTGGCTCATCGCCCCCAGGGTGGCGGAGCTGAGCGAGAGGAAGAGACGTGGCTCCAGCCTCTGCTCCTA
CTACGGTCGCTCTGCTGCTGGCCCCCGCGCCGGCGCTCAGCAGCCGCTCCCCCAGCCCCAGTCCCGACCA
CGGCAGGAGCAGTCGCCGCCCCCCGCGCGCCAGGATCTCCAGGGGCCACCGCTGCCCGAGGCAGCACCCG
GGATCACCAGTTTTCGAAGCAGCCCCTGGCAGCAGCCACCTCCGCTGCAGCAGCGGCGGCGAGGACGCGA
GCCTGAGGGCGCGACGGGGCTTCCCGGTGCTCCAGCGGCCGAGGGGGAGCCCGAGGAGGAGGACGGGGGC
GCGGCTGGGCAGCGGAGAGACGGCCGGCCGGGGAGTAGCCACAACGGCAGCGGGGACGGGGGCGCTGCCG
CCCCGAGCGCCCGACCCCGGGACTTCCTGTACGTGGGGGTGATGACCGCGCAGAAGTACCTGGGCAGCCG
CGCGCTGGCCGCGCAGCGGACCTGGGCGCGTTTCATCCCGGGCCGCGTGGAGTTCTTTTCCAGCCAGCAG
CCCCCCAACGCCGGCCAGCCCCCGCCACCCCTGCCTGTCATCGCGCTACCGGGTGTGGACGACTCCTATC
CTCCCCAGAAAAAGTCCTTCATGATGATCAAGTACATGCACGACCACTACCTGGACAAGTATGAGTGGTT
CATGCGCGCCGACGACGATGTCTACATCAAAGGTGATAAATTAGAAGAGTTTCTTAGATCGCTAAACAGC
AGTAAGCCTCTCTACCTGGGACAGACTGGCCTGGGGAATATTGAAGAGCTTGGAAAGCTGGGACTGGAGC
CTGGGGAAAACTTCTGTATGGGAGGACCTGGCATGATCTTTAGCCGAGAAGTTCTCAGGAGGATGGTGCC
ACATATTGGTGAATGCCTTAGAGAAATGTACACGACTCATGAGGATGTGGAAGTAGGAAGATGCGTTCGC
CGTTTTGGTGGGACTCAGTGTGTCTGGTCTTACGAGATGCAACAACTGTTCCATGAAAATTATGAACACA
ATCGGAAGGGTTACATCCAAGACCTTCACAATAGCAAAATCCATGCAGCCATAACACTTCATCCCAACAA
AAGGCCTGCATACCAATACAGGCTGCATAATTACATGCTCAGCCGCAAAATTTCTGAACTTCGCTACCGC
ACCATCCAGCTCCACAGGGAAAGTGCCCTGATGAGCAAGCTCAGTAACACAGAAGTGAGCAAAGAGGACC
AGCAGCTGGGAGTGATACCTTCTTTCAACCACTTCCAGCCTCGGGAGAGAAATGAAGTGATAGAATGGGA
GTTCCTGACAGGGAAGCTTCTATACTCAGCAGCTGAGAACCAGCCCCCTCGACAGAGCCTCAGTAGCATT
TTAAGAACAGCACTGGATGATACCGTCCTACAGGTGATGGAGATGATCAATGAGAATGCCAAGAGCAGAG
GACGGCTCATTGACTTCAAGGAAATTCAGTATGGCTACCGCAGAGTTAACCCCATGCACGGGGTGGAGTA
CATTTTGGATTTACTCCTTTTATACAAAAGACACAAGGGAAGGAAACTGACTGTGCCAGTGAGACGTCAT
GCCTATCTTCAGCAGTTGTTCAGCAAGCCTTTCTTCAGAGAGACCGAAGAGCTAGATGTCAACAGTCTTG
TGGAGAGTATTAACAGTGAAACTCAGTCATTCTCCTTTATATCTAATTCTTTAAAGATATTATCTTCTTT
TCAAGGTGCCAAAGAAATGGGAGGGCACAATGAAAAGAAAGTACACATTCTCGTTCCTCTCATCGGAAGG
TATGACATTTTCTTGAGATTCATGGAGAACTTTGAAAACATGTGTCTTATCCCAAAGCAGAATGTAAAGT
TGGTCATTATCCTTTTCAGTAGGGATTCTGGCCAAGACTCCAGCAAGCATATTGAGCTGATAAAAGGGTA
CCAGAACAAGTACCCCAAAGCAGAAATGACCCTGATCCCAATGAAGGGAGAGTTTTCCAGAGGTCTTGGT
CTTGAAATGGCTTCTGCCCAGTTTGACAATGACACTTTGCTGCTATTTTGTGATGTTGACTTGATCTTCA
GAGAAGATTTTCTCCAACGATGTAGAGACAATACAATTCAGGGACAACAGGTGTACTATCCCATCATCTT
TAGCCAGTATGACCCAAAGGTAACAAACGGGGGAAATCCTCCCACTGATGATTACTTCATATTCTCAAAA
AAGACTGGATTTTGGAGAGACTATGGATATGGCATCACCTGTATTTACAAAAGTGATCTTCTAGGTGCAG
GTGGATTTGATACCTCAATACAAGGCTGGGGACTAGAAGATGTAGATCTCTACAATAAAGTCATTCTATC
TGGCTTAAGGCCATTCAGAAGCCAAGAAGTAGGAGTGGTGCATATTTTCCATCCAGTTCATTGTGATCCT
AACTTGGACCCTAAGCAGTATAAGATGTGCTTAGGATCCAAGGCAAGTACTTTCGCCTCAACCATGCAAC
TGGCTGAACTCTGGCTTGAAAAACATTTAGGTGTCAGGTACAATCGAACTCTCTCCTGA

Translation (882 aa):
MAVRSRRPWMSVALGLVLGFTAASWLIAPRVAELSERKRRGSSLCSYYGRSAAGPRAGAQQPLPQPQSRP
RQEQSPPPARQDLQGPPLPEAAPGITSFRSSPWQQPPPLQQRRRGREPEGATGLPGAPAAEGEPEEEDGG
AAGQRRDGRPGSSHNGSGDGGAAAPSARPRDFLYVGVMTAQKYLGSRALAAQRTWARFIPGRVEFFSSQQ
PPNAGQPPPPLPVIALPGVDDSYPPQKKSFMMIKYMHDHYLDKYEWFMRADDDVYIKGDKLEEFLRSLNS
SKPLYLGQTGLGNIEELGKLGLEPGENFCMGGPGMIFSREVLRRMVPHIGECLREMYTTHEDVEVGRCVR
RFGGTQCVWSYEMQQLFHENYEHNRKGYIQDLHNSKIHAAITLHPNKRPAYQYRLHNYMLSRKISELRYR
TIQLHRESALMSKLSNTEVSKEDQQLGVIPSFNHFQPRERNEVIEWEFLTGKLLYSAAENQPPRQSLSSI
LRTALDDTVLQVMEMINENAKSRGRLIDFKEIQYGYRRVNPMHGVEYILDLLLLYKRHKGRKLTVPVRRH
AYLQQLFSKPFFRETEELDVNSLVESINSETQSFSFISNSLKILSSFQGAKEMGGHNEKKVHILVPLIGR
YDIFLRFMENFENMCLIPKQNVKLVIILFSRDSGQDSSKHIELIKGYQNKYPKAEMTLIPMKGEFSRGLG
LEMASAQFDNDTLLLFCDVDLIFREDFLQRCRDNTIQGQQVYYPIIFSQYDPKVTNGGNPPTDDYFIFSK
KTGFWRDYGYGITCIYKSDLLGAGGFDTSIQGWGLEDVDLYNKVILSGLRPFRSQEVGVVHIFHPVHCDP
NLDPKQYKMCLGSKASTFASTMQLAELWLEKHLGVRYNRTLS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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