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Report for CCDS34138.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34138.1 Public Homo sapiens 5 MTMR12 24 110 108 CCDS HistoryNCBI Gene:54545Re-query CCDS DB by CCDS ID:34138.1Re-query CCDS DB by GeneID:54545See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34138.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000382142.8 ENSP00000371577.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000382142.8Link to Ensembl Protein Viewer:ENSP00000371577.3Re-query CCDS DB by Nucleotide ID:ENST00000382142Re-query CCDS DB by Protein ID:ENSP00000371577
Original member Current member NCBI NM_001040446.3 NP_001035536.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001040446.3Link to Protein Sequence:NP_001035536.1Re-query CCDS DB by Nucleotide ID:NM_001040446Re-query CCDS DB by Protein ID:NP_001035536Link to BLAST:NP_001035536.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001035536.1 747 Q9C0I1-1 747 100% 0 0

Chromosomal Locations for CCDS 34138.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 32229778 32230347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 32233773 32233934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 32234962 32235129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 32239001 32239173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 32242057 32242127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 32243521 32243599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 32248002 32248126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 32248772 32248878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 32255693 32255768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 32263113 32263242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 32268701 32268794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 32270817 32270947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 32271833 32271905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 32273980 32274122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 32276682 32276742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 32312758 32312838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2244 nt):
ATGCTGGGGAAAGGAGTAGTCGGCGGTGGCGGCGGCACCAAGGCCCCCAAGCCCTCCTTCGTGTCGTACG
TACGCCCTGAGGAAATTCACACAAACGAAAAGGAAGTAACAGAGAAGGAAGTAACTCTTCACTTGTTGCC
AGGTGAACAGCTGCTTTGTGAAGCCAGCACAGTACTGAAGTATGTCCAGGAAGATTCCTGTCAGCATGGG
GTCTATGGGAGGCTTGTCTGCACAGACTTCAAGATTGCCTTCTTGGGTGATGATGAATCTGCATTGGATA
ATGATGAAACTCAATTTAAGAATAAGGTTATAGGAGAAAATGACATTACACTCCACTGTGTTGATCAGAT
TTATGGAGTGTTTGATGAGAAAAAGAAAACTCTCTTTGGACAACTGAAGAAATACCCTGAGAAGCTCATC
ATCCACTGCAAAGACCTTCGAGTGTTCCAGTTTTGTCTGAGGTACACAAAGGAAGAGGAAGTCAAAAGGA
TTGTCAGTGGCATAATTCATCATACCCAGGCTCCTAAACTGCTTAAACGATTATTTCTGTTTTCCTATGC
GACTGCTGCACAAAACAATACAGTCACTGATCCCAAGAACCATACCGTAATGTTTGACACACTTAAGGAC
TGGTGTTGGGAACTGGAACGGACCAAAGGCAACATGAAGTACAAAGCAGTGAGTGTCAACGAAGGCTATA
AAGTCTGTGAGAGATTGCCAGCATACTTTGTTGTCCCCACCCCTCTTCCTGAAGAGAATGTGCAGCGCTT
TCAGGGTCATGGCATACCAATATGGTGTTGGTCCTGCCACAATGGAAGTGCCCTTTTGAAAATGTCAGCA
CTGCCCAAAGAACAGGATGACGGCATTTTACAAATCCAAAAGAGCTTCTTAGATGGAATTTACAAGACCA
TCCACAGGCCACCCTATGAAATTGTTAAAACGGAAGACCTGTCAAGCAACTTCCTGTCCCTGCAGGAAAT
CCAGACTGCATACTCTAAATTTAAACAGCTATTTCTGATAGATAACAGTACTGAATTTTGGGACACAGAT
ATAAAATGGTTTTCTCTGTTGGAAAGTAGCAGCTGGCTTGACATAATCAGACGTTGCCTGAAAAAAGCAA
TAGAGATTACAGAATGTATGGAAGCACAAAACATGAATGTTCTTCTTTTAGAGGAGAATGCATCCGACCT
CTGCTGTCTCATTTCCTCTCTGGTGCAACTGATGATGGACCCCCACTGCAGAACCAGAATTGGTTTCCAG
AGCCTCATCCAAAAGGAGTGGGTCATGGGTGGCCACTGTTTCTTGGATCGCTGCAACCATCTCCGCCAGA
ACGACAAAGAGGAGGTTCCTGTGTTCCTGCTTTTCCTAGATTGTGTCTGGCAGCTGGTGCACCAGCATCC
CCCGGCATTTGAATTCACAGAGACTTACCTGACTGTTTTGTCAGATAGCCTGTATATACCTATTTTTAGC
ACCTTCTTCTTCAATTCACCTCATCAAAAAGATACTAACATGGGTAGAGAAGGCCAGGATACACAAAGCA
AGCCTTTGAATCTGCTCACCGTGTGGGATTGGTCGGTGCAGTTTGAACCCAAAGCCCAGACATTGCTCAA
AAACCCTCTTTATGTGGAAAAGCCAAAACTGGACAAAGGCCAACGGAAAGGAATGCGCTTCAAACATCAA
CGACAACTTTCTTTGCCACTTACACAATCTAAGTCATCTCCCAAAAGAGGATTTTTCAGGGAAGAAACAG
ATCATTTAATTAAAAACCTTCTGGGCAAGAGAATTAGCAAACTTATTAATTCTTCTGATGAGCTCCAAGA
CAACTTTCGAGAGTTCTATGACAGCTGGCATAGCAAGTCCACTGACTACCATGGTTTGTTGTTACCGCAT
ATCGAGGGGCCCGAAATCAAAGTCTGGGCCCAGCGCTACCTACGTTGGATTCCAGAAGCCCAAATCCTAG
GTGGTGGCCAAGTGGCCACTCTGAGCAAACTCTTGGAAATGATGGAGGAAGTCCAGAGTTTACAAGAGAA
GATCGACGAGAGACACCACAGCCAGCAGGCCCCCCAGGCTGAGGCCCCCTGCCTGCTGAGGAACTCTGCC
CGCCTCTCGTCTTTGTTTCCTTTCGCTCTGCTCCAGCGACATTCCTCTAAGCCCGTCTTACCCACCAGTG
GCTGGAAAGCTTTGGGAGATGAAGACGATTTGGCCAAACGAGAAGATGAGTTCGTGGACCTAGGGGATGT
GTGA

Translation (747 aa):
MLGKGVVGGGGGTKAPKPSFVSYVRPEEIHTNEKEVTEKEVTLHLLPGEQLLCEASTVLKYVQEDSCQHG
VYGRLVCTDFKIAFLGDDESALDNDETQFKNKVIGENDITLHCVDQIYGVFDEKKKTLFGQLKKYPEKLI
IHCKDLRVFQFCLRYTKEEEVKRIVSGIIHHTQAPKLLKRLFLFSYATAAQNNTVTDPKNHTVMFDTLKD
WCWELERTKGNMKYKAVSVNEGYKVCERLPAYFVVPTPLPEENVQRFQGHGIPIWCWSCHNGSALLKMSA
LPKEQDDGILQIQKSFLDGIYKTIHRPPYEIVKTEDLSSNFLSLQEIQTAYSKFKQLFLIDNSTEFWDTD
IKWFSLLESSSWLDIIRRCLKKAIEITECMEAQNMNVLLLEENASDLCCLISSLVQLMMDPHCRTRIGFQ
SLIQKEWVMGGHCFLDRCNHLRQNDKEEVPVFLLFLDCVWQLVHQHPPAFEFTETYLTVLSDSLYIPIFS
TFFFNSPHQKDTNMGREGQDTQSKPLNLLTVWDWSVQFEPKAQTLLKNPLYVEKPKLDKGQRKGMRFKHQ
RQLSLPLTQSKSSPKRGFFREETDHLIKNLLGKRISKLINSSDELQDNFREFYDSWHSKSTDYHGLLLPH
IEGPEIKVWAQRYLRWIPEAQILGGGQVATLSKLLEMMEEVQSLQEKIDERHHSQQAPQAEAPCLLRNSA
RLSSLFPFALLQRHSSKPVLPTSGWKALGDEDDLAKREDEFVDLGDV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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