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Report for CCDS34030.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34030.1 Public Homo sapiens 4 GPRIN3 24 110 108 CCDS HistoryNCBI Gene:285513Re-query CCDS DB by CCDS ID:34030.1Re-query CCDS DB by GeneID:285513See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34030.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000333209.4 ENSP00000328672.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000333209.4Link to Ensembl Protein Viewer:ENSP00000328672.3Re-query CCDS DB by Nucleotide ID:ENST00000333209Re-query CCDS DB by Protein ID:ENSP00000328672
Original member Current member EBI ENST00000609438.2 ENSP00000476603.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000609438.2Link to Ensembl Protein Viewer:ENSP00000476603.1Re-query CCDS DB by Nucleotide ID:ENST00000609438Re-query CCDS DB by Protein ID:ENSP00000476603
Original member Current member NCBI NM_198281.3 NP_938022.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_198281.3Link to Protein Sequence:NP_938022.2Re-query CCDS DB by Nucleotide ID:NM_198281Re-query CCDS DB by Protein ID:NP_938022Link to BLAST:NP_938022.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_938022.2 776 Q6ZVF9 776 100% 0 0

Chromosomal Locations for CCDS 34030.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 89247780 89250110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2331 nt):
ATGGGGACTGTACCTGACCCTCTGAGATCAGCTAAAACTTCCCTGATTGCAGCTTCCGGAAAAGAAGACG
ATCTAGGAGAGCCACAGGCTGCCTCACCTCGGCATCGACCAGCTCTCCTGTGTAAGAATGCCAATGGCTT
TTCAGGTGCCCCTGCAGAACCAGACCTCAGCCCCAGGGCAGCTGCCGAAGCCCTGATGCAGGTTTGTGAG
CATGAGACCACCCAACCAGATATGTCTTCTCCTGGTGTGTTCAATGAAGTGCAGAAAGCACCTGCCACAT
TCAACTCTCCCGGCAATCCCCAGCTGCCAGGGAGCAGCCAGCCCGCAGCATCAGCCCCGAGTTCTGCAGC
AGGAAGGGATCTTATACACACACCATTGACAATGCCCGCCAATCAGCACACCTGCCAGTCCATCCCAGGT
GATCAGCCCAATGCCATCACCTCATCCATGCCTGAAGATTCCCTGATGAGATCACAGAGAACCTCAAATA
GAGAGCAACCTGAGAAACCAAGTTGTCCTGTGGGAGGCGTCCTCAGTAGCAGCAAAGATCAGGTGTCCTG
TGAGTTTCCTTCTCCAGAAACAATCCAGGGAACAGTGCAGACTCCAGTGACAGCAGCCAGGGTGGTCAGT
CACTCATCCTCTCCTGTAGGTGGACCTGAAGGGGAAAGGCAGGGAGCCATCTGTGACTCTGAAATGAGGT
CCTGTAAACCTCTAACTAGAGAATCTGGATGTTCAGAGAACAAGCAGCCCTCTGTCACTGCCTCGGGCCC
CCAAGGCACAACTTCTGTGACACCTCAACCAACCCCCCTCACTAGCGAACCTTCGGCATGTCCCCCAGGT
CCAGAGAAGGTGCCGCTGCCAGCACAGCGTCAGATGTCAAGGTTCAAAGAAGCCAGTACGATGACCAACC
AAGCTGAAAGTGAAATCAAGGAAGTTCCCAGCAGGGCTTGGCAAGATGCGGAGGTGCAGGCAGTGGCGAG
TGTCGAGAGCAGATCCGTCTCCACCAGCCCCAGTATCCTCACTGCATTTCTGAAGGAAAGCCGTGCTCCT
GAGCATTTTGAACAAGAGCAGCTGCGTGTCATTTGCCACAGCAGTGGGAGCCACACACTGGAGCTCTCTG
ACAGCACGCTAGCCCCCCAGGAGTCCAGCCAGTGCCCTGGCATCATGCCACAGGTGCACATTCAGGCAGC
TGCAGCTGAGTCTACAGCTTTCCAACGGGAAAATAAACTTGCGAGCCTACCAGGTGGGGTCCTTAAAACC
TCATCAATCAATTTGGTCTCCAGTAATGCCCAGCATACGTGTAAAGAAGATGGGAGGTTAGCAGGAATGA
CTCCAGTGAGGGAAGAGTCAACTGCTAAAAAGCTCGCAGGTACTAATTCTAGCTCCCTGAAAGCTACCGC
CATTGACCAGATTTCTATCAGTGCATGCAGTCAAGCTGAAACAAGTTATGGATTGGGGAAATTTGAAACC
AGGCCATCTGAGTTTGCAGAGAAAACGACAAACGGCCACAAAACAGACCCAGATTGCAAACTATCTGACT
CTTGTGGCTCTATCAGCAAAGCTGATCATTCTGGGAGCTTGGATCCCACTAATAAAGGAGATGCAAGGGA
AAAGAAGCCTGCATCTCCTCAGGTAGTAAAAGAAAAAGAGTCTACTGGCACTGATACCTCGGATGCCAAA
ACCCTACTGCTCAATCCTAAATCCCAAGAAAGTGGAGGCACAGAATCAGCTGCTAATCCTACACCCTCCC
CAATTAGGAAGAACCAGGAGAGCACCTTAGAAGAAAACAGACAGACCAAGACAGCCACCAGCCTGAGCCT
GCCATCTGATCCCATGGGTGACTCCAGCCCAGGTTCTGGCAAGAAGACCCCATCTCGCTCCGTCAAAGCC
AGCCCACGCAGGCCCAGCCGCGTCAGCGAGTTCCTCAAGGAGCAAAAGTTAAATGTGACAGCAGCTGCTG
CTCAGGTAGGACTCACTCCAGGAGATAAGAAAAAGCAGCTTGGCGCAGACTCCAAGCTCCAGCTGAAACA
GTCCAAGCGTGTCAGGGACGTCGTGTGGGATGAGCAGGGAATGACCTGGGAAGTGTATGGTGCATCCTTG
GACGCAGAGTCCCTGGGAATCGCGATCCAGAACCATTTGCAAAGACAAATCAGGGAACATGAGAAATTAA
TCAAAACTCAAAATAGCCAGACCCGGAGATCCATTTCCTCAGATACTTCTTCAAATAAGAAGCTCAGAGG
AAGGCAGCACAGTGTTTTCCAGTCCATGCTGCAGAACTTCCGACGCCCCAACTGCTGCGTCCGTCCTGCC
CCGTCTTCTGTGTTAGATTGA

Translation (776 aa):
MGTVPDPLRSAKTSLIAASGKEDDLGEPQAASPRHRPALLCKNANGFSGAPAEPDLSPRAAAEALMQVCE
HETTQPDMSSPGVFNEVQKAPATFNSPGNPQLPGSSQPAASAPSSAAGRDLIHTPLTMPANQHTCQSIPG
DQPNAITSSMPEDSLMRSQRTSNREQPEKPSCPVGGVLSSSKDQVSCEFPSPETIQGTVQTPVTAARVVS
HSSSPVGGPEGERQGAICDSEMRSCKPLTRESGCSENKQPSVTASGPQGTTSVTPQPTPLTSEPSACPPG
PEKVPLPAQRQMSRFKEASTMTNQAESEIKEVPSRAWQDAEVQAVASVESRSVSTSPSILTAFLKESRAP
EHFEQEQLRVICHSSGSHTLELSDSTLAPQESSQCPGIMPQVHIQAAAAESTAFQRENKLASLPGGVLKT
SSINLVSSNAQHTCKEDGRLAGMTPVREESTAKKLAGTNSSSLKATAIDQISISACSQAETSYGLGKFET
RPSEFAEKTTNGHKTDPDCKLSDSCGSISKADHSGSLDPTNKGDAREKKPASPQVVKEKESTGTDTSDAK
TLLLNPKSQESGGTESAANPTPSPIRKNQESTLEENRQTKTATSLSLPSDPMGDSSPGSGKKTPSRSVKA
SPRRPSRVSEFLKEQKLNVTAAAAQVGLTPGDKKKQLGADSKLQLKQSKRVRDVVWDEQGMTWEVYGASL
DAESLGIAIQNHLQRQIREHEKLIKTQNSQTRRSISSDTSSNKKLRGRQHSVFQSMLQNFRRPNCCVRPA
PSSVLD


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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